Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314B02f
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase comple...    46   8e-06
At2g01090.1 68415.m00015 ubiquinol-cytochrome C reductase comple...    38   0.004
At3g48710.1 68416.m05319 expressed protein putative protein - Ar...    32   0.19 
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   5.5  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    27   5.5  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    27   7.2  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    27   7.2  
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    26   9.5  

>At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase complex
           7.8 kDa protein, putative / mitochondrial hinge protein,
           putative similar to SP|P48504 Ubiquinol-cytochrome C
           reductase complex 7.8 kDa protein (EC 1.10.2.2)
           (Mitochondrial hinge protein) (CR7) {Solanum tuberosum};
           contains Pfam profile PF02320: Ubiquinol-cytochrome C
           reductase hinge protein
          Length = 69

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = +1

Query: 112 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKD 291
           +VDP++ L E C  KP       +YQ C  R+       + C  +  DY   +DKCV   
Sbjct: 6   VVDPKKYLEESC--KPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCVAPK 63

Query: 292 LFKRLK 309
           LF +LK
Sbjct: 64  LFAKLK 69


>At2g01090.1 68415.m00015 ubiquinol-cytochrome C reductase complex
           7.8 kDa protein, putative / mitochondrial hinge protein,
           putative similar to SP|P48504 Ubiquinol-cytochrome C
           reductase complex 7.8 kDa protein (EC 1.10.2.2)
           (Mitochondrial hinge protein) (CR7) {Solanum tuberosum};
           contains Pfam profile PF02320: Ubiquinol-cytochrome C
           reductase hinge protein
          Length = 62

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 112 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVT 285
           +VD ++   E C  KP       +YQ C  R+       + C  +  DY H +DKCV+
Sbjct: 6   VVDQKRYFEESC--KPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCVS 61


>At3g48710.1 68416.m05319 expressed protein putative protein -
           Arabidopsis thaliana, EMBL:AL078465.1
          Length = 462

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 172 MWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKR 303
           +W++ +E   R  ++ K  +  +E+LID+  VLD  V K   K+
Sbjct: 142 VWSEQEEEKQRAKAKEKLDKCIKEKLIDFCDVLDIPVNKSTVKK 185


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 143 SVPKSLMPKTCGLNIKSAMIV*TPDLKLQKPVKKNSLTM 259
           SVPK L+     ++IKS+++V    +KL K   +NS T+
Sbjct: 438 SVPKCLLSSLEFVDIKSSILVYVARMKLVKYFLENSTTL 476


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112  LVDPQQSLREECSQ-KPDAQNMWAKYQECNDRVNSRSKTAETCEEEL 249
            L D   +L+EE  + K +A+ M A+Y E      SR   A+  EEE+
Sbjct: 2205 LQDEVLNLKEEFGKMKSEAKEMEARYIEAQQIAESRKTYADEREEEV 2251


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 142 ECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRL 306
           EC + PDA       +     VN  + T  T  +ELIDY+ + D+   +DL  ++
Sbjct: 356 ECVKDPDASIRKRALELVTLLVNENNVTQLT--KELIDYLEISDEDFKEDLSAKI 408


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 142 ECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRL 306
           EC + PDA       +     VN  + T  T  +ELIDY+ + D+   +DL  ++
Sbjct: 356 ECVKDPDASIRKRALELVTLLVNENNVTQLT--KELIDYLEISDEDFKEDLSAKI 408


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 133 LREECSQKPDAQNMWAKYQECNDRVNSRSKTAETC 237
           +RE+ S+K    N+  + QE +D + S  +  E+C
Sbjct: 347 VREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESC 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,282,543
Number of Sequences: 28952
Number of extensions: 138304
Number of successful extensions: 318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)