Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A12f
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0210 - 15874289-15875663,15878248-15879263                       28   4.7  
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    28   4.7  
02_04_0069 - 19450322-19450348,19451247-19451319,19451535-194517...    27   6.2  
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805...    27   6.2  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    27   8.2  

>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 26  RPHDVGRPWSPHEVPLHVLSEGRSVPI*ILPP 121
           RP D   PW PH +    LS+  +  + ++PP
Sbjct: 601 RPSDADNPWRPHYLVSRTLSQYCAYLLWLVPP 632


>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 204 SPENVSKWAEIRRKEAAE 257
           +PE + KW +I+RKEA E
Sbjct: 225 NPELIKKWTKIKRKEAKE 242


>02_04_0069 -
           19450322-19450348,19451247-19451319,19451535-19451790,
           19451808-19452057
          Length = 201

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 115 TSRICGSGVTGLPPS*FPHHSSTKFTKCQTPLKM*ASGLKSEGKKLPNTTKC 270
           T+++C S   G+  S FP  +  K T+      + ASG+ + G K+     C
Sbjct: 30  TTKVCASRGEGIVGSSFPRPNMVKETRSGNVDHLYASGVAAMGAKVAQVWLC 81


>01_06_0784 +
           31979670-31979976,31980092-31980337,31980428-31980544,
           31980638-31980792,31980910-31980984,31981080-31981346,
           31981436-31981756,31981858-31982271
          Length = 633

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 191 VNFVEEW*GNYDGGSPVTPEPQILE 117
           ++F+++W G+ D  SP  PEP   E
Sbjct: 576 LDFMDDWNGDADRPSPTAPEPAAQE 600


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 169  HHSSTKFTKCQTPLKM*ASGLKSEGKKLPNTTKCS 273
            H  +TK T C  P+K  AS  + + K     T CS
Sbjct: 962  HEKTTKRTTCALPVKEKASSPEGQHKNTIKRTTCS 996


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,735
Number of Sequences: 37544
Number of extensions: 281126
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)