Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A12f
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    27   7.4  
L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    27   9.8  

>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 138 RYWAA---AIVISSPLFYKIHKMSNSPEN 215
           +YWA      +I   L  K+H +S SPEN
Sbjct: 139 KYWARNRLEFIIDDQLISKVHVLSKSPEN 167


>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 150 QPSNARATNSGGKIYMGTERPSLRTCKGTSWGDQGRPT 37
           QP   R  N+   + + ++ PS R     SW D+ RPT
Sbjct: 193 QPQLRRKANTTNIVDVSSQVPSARNAIYGSWQDRHRPT 230


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 39  SDAPGRPMKFPYTFSAKVAQF 101
           S+ PG P +FP  F A +AQF
Sbjct: 79  SEFPGFPSEFPAGFPADIAQF 99


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 472 GTPGFPSHDVVKRRPVNCNTTHYRANWVPGP 380
           G PG P     K  P N  T H+  N  P P
Sbjct: 251 GNPGLPGPQGPKGEPGNPGTCHHCQNRAPAP 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,813
Number of Sequences: 27780
Number of extensions: 228904
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)