Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A12f
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20050.1 68418.m02387 protein kinase family protein contains ...    28   3.9  
At1g73650.3 68414.m08526 expressed protein                             28   3.9  
At1g73650.2 68414.m08528 expressed protein                             28   3.9  
At1g73650.1 68414.m08527 expressed protein                             28   3.9  
At1g72240.1 68414.m08352 expressed protein                             27   5.2  
At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2 (...    27   6.9  
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ...    27   9.1  
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro...    27   9.1  
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (...    27   9.1  
At3g59970.2 68416.m06694 methylenetetrahydrofolate reductase 1 (...    27   9.1  
At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1 (...    27   9.1  
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    27   9.1  

>At5g20050.1 68418.m02387 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 452

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  GRPMKFPYTFSAKVAQFPYKFYLQNL 128
           GR ++  Y+F  KVA  P KF L++L
Sbjct: 73  GRELRIEYSFLRKVAGVPTKFKLEDL 98


>At1g73650.3 68414.m08526 expressed protein
          Length = 302

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 135 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 236
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g73650.2 68414.m08528 expressed protein
          Length = 291

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 135 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 236
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g73650.1 68414.m08527 expressed protein
          Length = 290

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 135 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 236
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g72240.1 68414.m08352 expressed protein
          Length = 133

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 115 TSRICGSGVTGLPPS*FPHHSSTKFTKCQTPLKM*ASGLKSEGKK 249
           T+  CGS  T    S    +SS+  + C +PL+      K +GKK
Sbjct: 75  TATYCGSTSTSSSSSVSSCYSSSSVSSCSSPLQYRYREKKKDGKK 119


>At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2
           (MTHFR2) identical to SP|O80585
           Methylenetetrahydrofolate reductase (EC 1.5.1.20)
           {Arabidopsis thaliana}
          Length = 594

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 177 RVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTSWGD--QGR 43
           ++ R L WR+P+N   T    +      RP     +   W D  QGR
Sbjct: 307 KISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGR 353


>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
           (PYR4) identical to SP|O04904 Dihydroorotase,
           mitochondrial precursor (EC 3.5.2.3) (DHOase)
           {Arabidopsis thaliana}
          Length = 377

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 213 FQGSLTFCEFCRRVVRKLRWRQPSNARATNSGGKIYMGTE-RPSLRTCKGTSWGDQG 46
           FQG L    +C  V+++   R+      T+   K ++GT+  P  R+ K +S G  G
Sbjct: 241 FQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFLGTDSAPHERSRKESSCGCAG 297


>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400); similar to
           phytochrome A supressor spa1  (GI:4809171) [Arabidopsis
           thaliana]; contains non-consensus (GC) donor splice
           sites at introns 4 and 6
          Length = 1017

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 144 SNARATNSGGKIYMGTERPSLRTCKGTSWGDQGRPTS*GRK*MKK 10
           S+ + TN  G +    E  +++TC+G+S    GRP+S  R  M +
Sbjct: 81  SSRQNTNDEGDV---VEELTVKTCEGSSMAIVGRPSSRARLEMNR 122


>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
           (MTHFR1) identical to methylenetetrahydrofolate
           reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
          Length = 592

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -2

Query: 177 RVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTSWGD 52
           ++ R L WR+P+N   T    +      RP     +   W D
Sbjct: 307 KISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWND 348


>At3g59970.2 68416.m06694 methylenetetrahydrofolate reductase 1
           (MTHFR1) identical to methylenetetrahydrofolate
           reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
          Length = 407

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -2

Query: 177 RVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTSWGD 52
           ++ R L WR+P+N   T    +      RP     +   W D
Sbjct: 307 KISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWND 348


>At3g59970.1 68416.m06693 methylenetetrahydrofolate reductase 1
           (MTHFR1) identical to methylenetetrahydrofolate
           reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
          Length = 421

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -2

Query: 177 RVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTSWGD 52
           ++ R L WR+P+N   T    +      RP     +   W D
Sbjct: 307 KISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWND 348


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 163 FPHHSSTKFTKCQTPLKM*AS-GLKSEGKKLPNTTKC 270
           +PH   +K TK Q P K  A+ G K E +++    KC
Sbjct: 33  WPHRYQSKKTKLQAPTKKPANKGGKKEDEEIIKQAKC 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,220
Number of Sequences: 28952
Number of extensions: 211394
Number of successful extensions: 470
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)