Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 278 3e-76
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 30 0.24
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 28 0.97
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 26 3.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 6.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 6.8
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 25 6.8
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 25 9.0
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 25 9.0
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 278 bits (682), Expect = 3e-76
Identities = 119/170 (70%), Positives = 144/170 (84%)
Frame = +3
Query: 12 VKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDV 191
VKFWF++N+LSPS K +P +A++Y FEYE + Y WP WL++Q ++QR IWGYKILFLDV
Sbjct: 1187 VKFWFIENFLSPSFKSSIPAIAKKYNFEYEYITYNWPHWLRKQEEKQREIWGYKILFLDV 1246
Query: 192 LFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQGYWRN 371
LFPL + K+I+VDADQIVRADL+EL+++DL GAPYGYTP CDSR EM+GFRFWK+GYW+
Sbjct: 1247 LFPLELHKVIYVDADQIVRADLQELMDMDLHGAPYGYTPMCDSREEMEGFRFWKKGYWKK 1306
Query: 372 HLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDPNSLSNLDQDL 521
L+G YHISALYVVDL RFR++ AGD LR QYQ LS DPNSLSNLDQDL
Sbjct: 1307 FLRGLKYHISALYVVDLDRFRKMGAGDLLRRQYQLLSADPNSLSNLDQDL 1356
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 91 NPYSWAMYGRISLSEGLR*FLRNQNLTGD 5
NP WA Y R+ LS + F R+Q LTG+
Sbjct: 175 NPVIWAAYFRLELSYMTKLFARSQILTGN 203
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 228 DADQIVRADLKELVELDLGGAPYG 299
D D++ RA +KE++E + GG P G
Sbjct: 498 DDDRVTRATIKEVLEDNYGGEPAG 521
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 331 WTVSGSGSKATGAITFKVVVITSARCTSWT*NGSAASPPGTASEDSTRRSA 483
WT S S T ++ V +S+ +SW+ + S P AS + S+
Sbjct: 928 WTAETSSSAITSSVAASVTPTSSSSASSWS-SSSEVDPSTAASATGSSTSS 977
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 411 VVDLKRFRRIAAGDRLRGQYQALS 482
V+D++ FR+ AG+ L G Y ALS
Sbjct: 132 VLDVEVFRQTVAGNVLTGSYCALS 155
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 139 WRCSQRGHWYWTSSYSNPYSWAMYGRISLSEGL-R*FLRN 23
+RC Q+GHW + ++ R+ + G+ R FL+N
Sbjct: 186 YRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKN 225
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 176 SVPGRVVPAARQEDYLRRC 232
SVPGR+VPA Q+ C
Sbjct: 193 SVPGRIVPALTQQQLNNLC 211
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +3
Query: 63 LPYMAQEYGFEYELVQYQWPRWLQRQR----DRQRTIWGYKILFLDVLFPLHVKKIIF 224
+P+ A + + + + Y P WL R + + G K ++ D L LH + ++
Sbjct: 253 MPFFALSHWYAFRIEDYDTPTWLSCARLPLLKAFKDVIGLKDVWCDSLQTLHGDRYVY 310
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 195 FPLHVKKIIFVDADQIVRADLKELV 269
+PL+ +IF+D D IVRA ++ L+
Sbjct: 204 YPLN-PNLIFIDTDVIVRAPVRFLI 227
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = -1
Query: 245 NNLVGIDEDNLLDVQREQHVQEQNLVSPDGALSVA 141
+++V +D+D + ++ + +++V P GA++VA
Sbjct: 344 DDVVLVDKDEICAAIKDVFLDTRSVVEPSGAMAVA 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,187
Number of Sequences: 5004
Number of extensions: 39237
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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