Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314A11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 237 3e-63
03_02_0706 + 10554672-10555778 48 5e-06
03_03_0020 + 13803567-13804610 46 2e-05
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 42 2e-04
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 41 5e-04
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720... 40 0.001
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 36 0.026
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 36 0.026
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 35 0.046
04_04_0600 + 26526667-26527692 35 0.046
11_06_0246 - 21660349-21660624,21661071-21661589,21662003-216623... 34 0.060
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 33 0.11
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 33 0.18
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049... 33 0.18
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562... 32 0.32
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 32 0.32
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 1.3
03_06_0085 + 31542601-31542855 28 5.2
10_08_0805 + 20705241-20705624,20706163-20706470,20706547-207066... 27 6.9
01_06_1694 + 39246262-39247320,39247464-39247590,39248638-392487... 27 6.9
07_03_1255 + 25234072-25234220,25235052-25235288,25235713-252358... 27 9.1
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 27 9.1
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982... 27 9.1
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 237 bits (581), Expect = 3e-63
Identities = 113/191 (59%), Positives = 139/191 (72%), Gaps = 20/191 (10%)
Frame = +3
Query: 9 PVKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLD 188
PVKFWF+KNYLSP KD++P+MAQEYGFEYELV Y+WP WL +Q+++QR IW YKILFLD
Sbjct: 1354 PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELVTYKWPTWLHKQKEKQRIIWAYKILFLD 1413
Query: 189 VLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQGYWR 368
V+FPL ++K+IFVDADQIVRAD+ EL +++L G P YTPFCD+ EMDG+RFWKQ +
Sbjct: 1414 VIFPLSLRKVIFVDADQIVRADMGELYDMNLKGRPLAYTPFCDNNKEMDGYRFWKQLFAN 1473
Query: 369 NHL--------------------QGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQD 488
+ L G I ALYVVDL +FR+ A+GD LR Y+ LS+D
Sbjct: 1474 SLLLSLCERVSGKIICEEDHTTSGGCDLCICALYVVDLAKFRQTASGDTLRVFYETLSKD 1533
Query: 489 PNSLSNLDQDL 521
PNSLSNLDQDL
Sbjct: 1534 PNSLSNLDQDL 1544
>03_02_0706 + 10554672-10555778
Length = 368
Score = 48.0 bits (109), Expect = 5e-06
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Frame = +3
Query: 186 DVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSR-TEMDGFRFWKQGY 362
D+L P V+++I++D+D +V D+ +L DLGG G +C + T+ RFW
Sbjct: 172 DLLEPC-VRRVIYLDSDLVVVDDVAKLWRTDLGGRTVGAPEYCHANFTKYFTDRFWSDKQ 230
Query: 363 WRNHLQGR--SYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDP 491
+ GR Y + + V+DL R+RR R+ ++ + + P
Sbjct: 231 FAGTFAGRRPCYFNTGVMVLDLARWRRTGYTRRIE-RWMEIQKSP 274
>03_03_0020 + 13803567-13804610
Length = 347
Score = 45.6 bits (103), Expect = 2e-05
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Frame = +3
Query: 39 LSPSLKDILPYM-AQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDVLFPLHVKK 215
L+ +++ PY+ + Y F+ V+ + R ++ D+ Y ++L P V++
Sbjct: 107 LAAAVRATFPYLDLRVYRFDPSRVRGRISRSIRHALDQPLN---YARIYLADTLPPDVRR 163
Query: 216 IIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSR-TEMDGFRFWKQGYWRNHLQGR-- 386
+I++D+D +V D++ L +DLGG G +C + T FW GR
Sbjct: 164 VIYLDSDVVVVDDIRALASVDLGGHVVGAPEYCHANFTNYFTDAFWSDPALNGTFAGRRP 223
Query: 387 SYHISALYVVDLKRFR 434
Y + + V+D+ ++R
Sbjct: 224 CYFNTGVMVMDVGKWR 239
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/109 (27%), Positives = 52/109 (47%)
Frame = +3
Query: 162 WGYKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGF 341
+G+ L L P + +++ +D D IV+ DL L L++GG G FC+ ++
Sbjct: 422 FGHSHFLLPDLLP-SLNRVVVLDDDLIVQKDLSSLWNLNMGGKVVGAIQFCE--VKLGQL 478
Query: 342 RFWKQGYWRNHLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQD 488
+ + + RN +S L VV+LK++R + R Q L +D
Sbjct: 479 KAYTEE--RNFDNNSCVWLSGLNVVELKKWRDLHITSRYEQLLQKLQKD 525
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 41.1 bits (92), Expect = 5e-04
Identities = 30/109 (27%), Positives = 52/109 (47%)
Frame = +3
Query: 162 WGYKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGF 341
+G+ L L P + +++ +D D IV+ DL L L++GG G FC+ ++
Sbjct: 485 FGHSHFLLPDLLP-SLNRVVVLDDDLIVQKDLSSLWNLNMGGKVVGAIQFCE--VKLGQL 541
Query: 342 RFWKQGYWRNHLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQD 488
+ + + RN +S L VV+LK++R + R Q L +D
Sbjct: 542 KAYTEE--RNFGTNSCVWLSGLNVVELKKWRDLHITSRYDQLLQKLQKD 588
>12_02_0881 -
23970143-23970433,23970814-23971116,23971490-23972077,
23972606-23972761,23972852-23972910,23974294-23974561
Length = 554
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 177 LFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
++L LFP ++ K++F+D D +V+ DL L ++DLGG G C
Sbjct: 353 IYLPELFP-NLNKVVFLDDDVVVQRDLSSLWDIDLGGKVNGAVETC 397
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 35.5 bits (78), Expect = 0.026
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = +3
Query: 18 FWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDVLF 197
F +L + SP LK + Y F+ + Q + + Q + +I + +L +F
Sbjct: 469 FTWLNSSYSPVLKQLESQFMINYYFKTQ--QDKRDNNPKFQNPKYLSILNHLRFYLPEIF 526
Query: 198 PLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
P + K++F+D D +V+ DL L +DL G G C
Sbjct: 527 P-KLNKVLFLDDDIVVQQDLSALWSIDLKGKVNGAIQTC 564
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3
Query: 135 RQRDRQRTIWGYKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
+ R +++G+ + L LF ++K++I ++ D IV+ DL + LDL G G C
Sbjct: 466 QMRTEYISVFGHSLFLLPELFS-NLKRVIVLEDDTIVQRDLSHIWNLDLKGKVIGAVQSC 524
Query: 315 DSR 323
R
Sbjct: 525 RVR 527
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 34.7 bits (76), Expect = 0.046
Identities = 24/100 (24%), Positives = 45/100 (45%)
Frame = +3
Query: 15 KFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDVL 194
+F +L SP LK + +Y F L+ + + +I + +L +
Sbjct: 406 EFTWLNASYSPVLKQLESQSMIDYYFRTHRANSDSN--LKYRNPKYLSILNHLRFYLPEI 463
Query: 195 FPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
+P ++ KI+F+D D +++ DL L +D+ G G C
Sbjct: 464 YP-NLHKIVFLDDDVVIKKDLTSLWSIDMKGKVIGVVETC 502
>04_04_0600 + 26526667-26527692
Length = 341
Score = 34.7 bits (76), Expect = 0.046
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = +3
Query: 168 YKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLG-GAPYGYTPFCDSR-TEMDGF 341
Y ++L L P V +++++D+D +V D+ L DLG A +C + T
Sbjct: 133 YARIYLADLLPRSVSRVLYLDSDLLVVDDVARLWATDLGPDAALAAPEYCHANFTSYFTD 192
Query: 342 RFWK----QGYWRNHLQGRSYHISALYVVDLKRFRRIAAGDRLRGQY 470
FW + N + Y + + V+DL R+R A G ++ +Y
Sbjct: 193 AFWSHPEYSSIFTNRGRAPCYFNTGVMVIDLDRWR--AGGYTVKLEY 237
>11_06_0246 -
21660349-21660624,21661071-21661589,21662003-21662360,
21662499-21662734,21663459-21663509,21663636-21663682,
21663917-21664076
Length = 548
Score = 34.3 bits (75), Expect = 0.060
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Frame = +3
Query: 21 WFLKNYLSPS---LK--DILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFL 185
WFL N +P+ +K D L ++ ++ F ++ + PR+ + +L
Sbjct: 306 WFLTNPPNPATIQIKSLDNLKWLPADFSFRFKQKGIRDPRYTSALNHLR--------FYL 357
Query: 186 DVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC---DSRTEMDGFRFWKQ 356
+FP + K++ +D D +V+ DL L ++DL G G C D ++ +
Sbjct: 358 PEVFP-SLNKLVLLDHDIVVQRDLSGLWQIDLNGKVNGAVETCTSGDGYHRLENLVNFSD 416
Query: 357 GYWRNHLQGRS-YHISALYVVDLKRFRR 437
N ++ H + + DLK +RR
Sbjct: 417 PSIINKFDAKACIHAFGMNIFDLKEWRR 444
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +3
Query: 18 FWFLKNYLSPSLKDILPYMAQEYGFEYELVQY--QWPRWLQRQRDRQRTIWGYKILFLDV 191
F +L + P LK + +EY F+ + + L+ + + ++ + +L
Sbjct: 333 FKWLNSSYCPVLKQLESVAMKEYYFKADRPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQ 392
Query: 192 LFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
++P + KI+F+D D +V+ DL L E+DL G G C
Sbjct: 393 VYP-KLNKILFLDDDIVVQKDLTGLWEVDLNGNVNGAVETC 432
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +3
Query: 15 KFWFLKNYLSPSLKDILPYMAQEYGFEY-ELVQYQWPRWLQRQRDRQRTIWGYKILFLDV 191
+F +L + SP +K + +Y F+ + + + P++ + + ++ + +L
Sbjct: 487 EFTWLNSTYSPVMKQLESQSMIDYYFKSGQARRDENPKF---RNPKYLSMLNHLRFYLPE 543
Query: 192 LFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFC 314
+FP + K++F+D D +V+ DL + +DL G G C
Sbjct: 544 IFP-KLSKVLFLDDDTVVQQDLSAIWSIDLKGKVNGAVETC 583
>03_02_0880 -
12103703-12103726,12103938-12104210,12104389-12104931,
12105017-12105374,12105696-12105994,12106116-12106189,
12106630-12106717,12107573-12107674,12107813-12107841,
12108118-12108235
Length = 635
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSR 323
+KK+I +D D +V+ DL L +D+G G FC R
Sbjct: 452 LKKVIVLDDDVVVQRDLSFLWNIDMGDKVNGAVKFCGLR 490
>07_03_1706 +
28855669-28855801,28856013-28856044,28856158-28856229,
28856631-28856727,28857195-28857256,28857726-28858024,
28858306-28858663,28858692-28859297,28859500-28859698,
28860039-28860101,28860603-28860673
Length = 663
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 156 TIWGYKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSR 323
+++ + F+ +F + K++ +D D +V+ DL L LD+G G FC R
Sbjct: 452 SLFSHSHFFIPEIFK-DLNKVVVLDDDVVVQRDLSFLWSLDMGDKVNGAIEFCGLR 506
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 165 GYKILF--LDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTE-MD 335
GY LF +DV++ + I + AD + +D+ LG P G F S + +D
Sbjct: 212 GYNFLFTDVDVMWFRDPFRHISMGADIAISSDVFIGDPYSLGNFPNGGFLFVRSNDKTLD 271
Query: 336 GFRFWKQGYWR 368
+R W+QG WR
Sbjct: 272 FYRSWQQGRWR 282
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 321 RTEMDGFRFWKQGYWRNHLQGRSYHISALY-VVDLKRFRRIAAGDRLRGQYQALSQDPNS 497
R+E D F G+ + G Y + + ++D+ + I RL Y++L DPNS
Sbjct: 665 RSEFDPFLLNGGGFLAPNQTGEVYDVILYFGIIDILQDYDITK--RLEHAYKSLQTDPNS 722
Query: 498 LSNLDQDL 521
+S +D L
Sbjct: 723 ISAVDPKL 730
>03_06_0085 + 31542601-31542855
Length = 84
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 331 WTVSGSGSKATGAITFKVVVITSARCTSWT*NGSAASPPGTASEDSTRR 477
WTV + +GA F+ V + CT+ + +G P G A E + ++
Sbjct: 8 WTVERERIRVSGAQAFRTTVASKRGCTARSDDGQ-NKPDGAAVETAAKK 55
>10_08_0805 +
20705241-20705624,20706163-20706470,20706547-20706679,
20706776-20707060
Length = 369
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 485 LAERLVLSSEAVPGGDAAEPFQVHDVQRADVITTTLKVIAPVALLPEPETVHFCPTIAER 306
LAE +V EA P G F +R V+ L VA+ P+ +++ FC T+ R
Sbjct: 176 LAEFMVDVLEARPHGRLMS-FDP-STRRTTVLARGLYFANGVAVSPDQDSLVFCETVMRR 233
Query: 305 C 303
C
Sbjct: 234 C 234
>01_06_1694 +
39246262-39247320,39247464-39247590,39248638-39248783,
39248898-39248965,39249055-39249157,39249616-39249741
Length = 542
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 153 RTIWGYKILFLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYG 299
R I Y++ L P+ V + + +A R DL L+ + +GGAP G
Sbjct: 290 RAIERYRVTLLPAAPPVLVAMVKYEEAR---RRDLSSLLVIGIGGAPLG 335
>07_03_1255 +
25234072-25234220,25235052-25235288,25235713-25235845,
25235935-25236237
Length = 273
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 401 ADVITTTLKVIAPVALLPEPETVHFCPTIAERCIAVW 291
A V+ L VAL P+ V C T+ RC+ VW
Sbjct: 100 ASVVLDGLGFANGVALPPDEAFVVVCETMRFRCLRVW 136
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 474 PGTVLGGGPRRRCGGTVSSPRRTAR*CDNYDLE 376
P T LGG P +R S+P R +YD++
Sbjct: 292 PTTALGGSPPKRPASAPSAPPAQDRHAQSYDVQ 324
>01_03_0229 +
13995610-13995844,13996391-13996445,13998126-13998211,
13999484-13999671,14000111-14000169,14000618-14000646,
14000742-14001138,14001569-14002028
Length = 502
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 443 GDAAEPFQVHDVQRADVITTTLKVIAPVALLPEPETVHFCP 321
G++A P HD + + L V AP A P P +F P
Sbjct: 210 GESAPPVTFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQP 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,581
Number of Sequences: 37544
Number of extensions: 288532
Number of successful extensions: 1059
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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