Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   3e-21
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)                 27   9.4  
SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)                  27   9.4  

>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 44/73 (60%), Positives = 55/73 (75%)
 Frame = +3

Query: 180 FLDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQG 359
           F+  +F L + +I+FVDAD IVR DL+EL+++DL GAPY YTPFC SR EMDGFRFW QG
Sbjct: 54  FMRSVFAL-MFRILFVDADLIVRTDLQELMDMDLEGAPYAYTPFCSSRKEMDGFRFWNQG 112

Query: 360 YWRNHLQGRSYHI 398
           YWR  +   SY +
Sbjct: 113 YWRVTVSKLSYSV 125



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +3

Query: 399 SALYVVDLKRFRRIAAGDRLRGQYQALSQDPNSL 500
           SALY +DLKRFRR+AAGDRLRGQYQ L   PN++
Sbjct: 167 SALYAIDLKRFRRLAAGDRLRGQYQDL---PNNM 197


>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 352 FQNLKPSISVLLSQNGV*PYGAPPKSNSTNSLRSARTIWSAST 224
           F + KP++  ++ Q+    YGA PKS++T +L S    W+  T
Sbjct: 346 FYDSKPAVLEVIGQD---QYGAIPKSSTTMALISMLHAWALGT 385


>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
          Length = 642

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 343 LKPSISVLLSQNGV*PYGAPPKSNSTNSLRSARTIWSAST 224
           +KP++  ++ Q+    YGA PKS++T +L S    W+  T
Sbjct: 267 VKPAVLEVIGQD---QYGAIPKSSTTMALISMLHAWALGT 303


>SB_5026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 343 LKPSISVLLSQNGV*PYGAPPKSNSTNSLRSARTIWSAST 224
           +KP++  ++ Q+    YGA PKS++T +L S    W+  T
Sbjct: 114 VKPAVLEVIGQD---QYGAIPKSSTTMALISMLHAWALGT 150


>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
          Length = 210

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 343 LKPSISVLLSQNGV*PYGAPPKSNSTNSLRSARTIWSAST 224
           +KP++  ++ Q+    YGA PKS++T +L S    W+  T
Sbjct: 11  VKPAVLEVIGQD---QYGAIPKSSTTMALISMLHAWALGT 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,922
Number of Sequences: 59808
Number of extensions: 323683
Number of successful extensions: 3053
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3053
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)