Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...   306   7e-84
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...   293   4e-80
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...   293   4e-80
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    27   6.2  
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score =  306 bits (751), Expect = 7e-84
 Identities = 130/173 (75%), Positives = 153/173 (88%)
 Frame = +3

Query: 3    KSPVKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILF 182
            K PVKFW LKNYLSP  K+ LP +A+ YGFEYEL++Y+WPRWL +Q+++QR +WG+KILF
Sbjct: 1229 KHPVKFWLLKNYLSPQFKETLPTLAKHYGFEYELIEYKWPRWLHQQKEKQRIMWGFKILF 1288

Query: 183  LDVLFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQGY 362
            LDVLFPL V+K+IFVDADQ+VRADL EL++ DLG APYGY PFC+SR EMDGFRFWKQGY
Sbjct: 1289 LDVLFPLDVQKVIFVDADQVVRADLMELMKFDLGNAPYGYVPFCESRKEMDGFRFWKQGY 1348

Query: 363  WRNHLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDPNSLSNLDQDL 521
            W NHL GR YHISALYV+DL++FR+IAAGDRLRGQYQ LS DPNSL+NLDQDL
Sbjct: 1349 WANHLAGRRYHISALYVIDLQKFRQIAAGDRLRGQYQGLSGDPNSLANLDQDL 1401


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score =  293 bits (720), Expect = 4e-80
 Identities = 125/170 (73%), Positives = 148/170 (87%)
 Frame = +3

Query: 12   VKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDV 191
            VKFW LKNYLSP  K+ +P +A+ Y FE+ELV+Y+WP+WL +Q ++QR +WGYKILFLDV
Sbjct: 1122 VKFWLLKNYLSPKFKETIPKLAEFYKFEFELVEYKWPKWLHKQTEKQRVMWGYKILFLDV 1181

Query: 192  LFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQGYWRN 371
            LFPL+V KIIFVDADQ+VRADL+EL++ +L GAPYGY PFC+SRTEMDGFRFWK GYW+N
Sbjct: 1182 LFPLNVDKIIFVDADQVVRADLQELMDFNLNGAPYGYVPFCESRTEMDGFRFWKSGYWKN 1241

Query: 372  HLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDPNSLSNLDQDL 521
            HL GR YHISALYVVDLK FR  +AGDRLRG+Y +LS DPNSLSNLDQDL
Sbjct: 1242 HLMGRKYHISALYVVDLKAFREFSAGDRLRGRYDSLSADPNSLSNLDQDL 1291


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score =  293 bits (720), Expect = 4e-80
 Identities = 125/170 (73%), Positives = 148/170 (87%)
 Frame = +3

Query: 12   VKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQYQWPRWLQRQRDRQRTIWGYKILFLDV 191
            VKFW LKNYLSP  K+ +P +A+ Y FE+ELV+Y+WP+WL +Q ++QR +WGYKILFLDV
Sbjct: 1122 VKFWLLKNYLSPKFKETIPKLAEFYKFEFELVEYKWPKWLHKQTEKQRVMWGYKILFLDV 1181

Query: 192  LFPLHVKKIIFVDADQIVRADLKELVELDLGGAPYGYTPFCDSRTEMDGFRFWKQGYWRN 371
            LFPL+V KIIFVDADQ+VRADL+EL++ +L GAPYGY PFC+SRTEMDGFRFWK GYW+N
Sbjct: 1182 LFPLNVDKIIFVDADQVVRADLQELMDFNLNGAPYGYVPFCESRTEMDGFRFWKSGYWKN 1241

Query: 372  HLQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDPNSLSNLDQDL 521
            HL GR YHISALYVVDLK FR  +AGDRLRG+Y +LS DPNSLSNLDQDL
Sbjct: 1242 HLMGRKYHISALYVVDLKAFREFSAGDRLRGRYDSLSADPNSLSNLDQDL 1291


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 358 PCFQNLKPSISVLLS----QNGV*PYGAPPKSNSTNSLRSARTIWSASTKIIFLTCSGNN 191
           P +  +KP+ SV+LS    QN   P   P  ++ TNS  S     S+  +I +++   + 
Sbjct: 509 PAYPEVKPNSSVILSSTQSQNNTSPQTIPASASVTNSATSTVVDTSSQFQIPYVSSPASA 568

Query: 190 TS 185
           TS
Sbjct: 569 TS 570


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 333 PFLSYYRRTVYSRMVRLLNLIPPI 262
           P+L  Y RT  +R+  ++ L PPI
Sbjct: 499 PYLQDYHRTAVNRLKNMITLAPPI 522


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 105  VQYQWPRWLQRQRDRQRTIWGYKILFLDVLFPLHV----KKIIFVDADQIVRADLKELVE 272
            ++ +W  W    ++   TI  +K+ ++ V   L      ++I+ VD ++    DL++  E
Sbjct: 1690 IRVKWDAW---PKEDSETITSFKVRYVPVASVLSSVSSEEEIMIVDTNECTLNDLRKFTE 1746

Query: 273  LDLGGAPY 296
              +  +PY
Sbjct: 1747 YQISVSPY 1754


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   PVKFWFLKNYLSPSLKDILPYMAQEYGFEYELVQ 110
           P   W L +YL  ++      + QE GF +++++
Sbjct: 268 PANQWLLNSYLEAAIHPHCSVIGQEVGFSFKIIK 301


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 334 TVSGSGSKATGAITFKVVVITSARCTSWT*NGSAASPPGTASEDSTR 474
           T + SGS  +G  T      +S  CTSW  NG   +   T ++   R
Sbjct: 191 TTASSGSVTSGTCT-SYAADSSTSCTSWAKNGFCTNTFYTVAQRKAR 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,135,786
Number of Sequences: 27780
Number of extensions: 227040
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)