Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.7  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 60  ILPYMAQEYGFEYELV 107
           ++P+M Q Y +E++L+
Sbjct: 79  LIPFMQQNYPYEWQLI 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 375  LQGRSYHISALYVVDLKRFRRIAAGDRLRGQYQALSQDPNS 497
            L G++   S + +V   + + +  G  L+GQ   + Q P+S
Sbjct: 1015 LPGKTLLASQIKLVSPGQIKSLLTGHGLQGQTIFIKQSPSS 1055


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 RWLQRQRDRQRTIWGYKILFLDVLFPLHVKKIIFVDADQI-VRADLKELVELDLGGAPYG 299
           R +Q ++   + +    ILF     P H +++++V A +     DL E + + L G  Y 
Sbjct: 260 RQIQSRKSVIKMLSAVVILFFICWAPFHTQRLLYVYAQESDYYPDLNEWLYI-LSGCLYY 318

Query: 300 YT 305
           ++
Sbjct: 319 FS 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,002
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)