Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   226   1e-60
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   226   2e-60
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   9.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  226 bits (553), Expect = 1e-60
 Identities = 104/173 (60%), Positives = 124/173 (71%)
 Frame = +3

Query: 3   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 182
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 183 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 362
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 363 ADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMXNRRRIQRKGP 521
            D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+ NRR +QR+GP
Sbjct: 155 DDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGP 207


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  226 bits (552), Expect = 2e-60
 Identities = 104/173 (60%), Positives = 124/173 (71%)
 Frame = +3

Query: 3   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 182
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 183 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 362
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 363 ADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMXNRRRIQRKGP 521
            D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+ NRR +QR+GP
Sbjct: 155 DDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGP 207


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 353 PGCSRQSPGDQQDQTGCHLPEAPQGMV 433
           PGC R    +++D   C +  +P  +V
Sbjct: 81  PGCYRSYSSNKEDHPPCEICNSPMNLV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,104
Number of Sequences: 5004
Number of extensions: 36352
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)