Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314A10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 206 6e-54
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.50
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 29 2.7
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 27 8.1
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 206 bits (504), Expect = 6e-54
Identities = 98/173 (56%), Positives = 120/173 (69%)
Frame = +3
Query: 3 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 182
DLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGN
Sbjct: 34 DLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 93
Query: 183 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 362
MCRGG MFAP K +RRWH QARGH+I+++ E+PLVV
Sbjct: 94 MCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVV 153
Query: 363 ADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMXNRRRIQRKGP 521
+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+ NR+ Q+ GP
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGP 206
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 39 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 209
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 210 PTKP 221
KP
Sbjct: 197 APKP 200
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 509 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 357
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 365 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 225
GY G + N+ N VS+ + + ++A +S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 195 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 112
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 354
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 354
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 354
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 354
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 235 TVASTS---DSGERPWRQPLLLPASQRSFRLEDTLLKRFPSFP 354
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 380 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,952
Number of Sequences: 27780
Number of extensions: 223406
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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