Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   212   1e-55
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   212   1e-55
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   0.82 
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   0.82 
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   1.9  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   1.9  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   3.3  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   4.4  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   5.8  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   5.8  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    27   7.7  
At1g76010.1 68414.m08825 expressed protein                             27   7.7  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    27   7.7  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  212 bits (518), Expect = 1e-55
 Identities = 100/173 (57%), Positives = 116/173 (67%)
 Frame = +3

Query: 3   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 182
           D+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGN
Sbjct: 41  DIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGN 100

Query: 183 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 362
           MCRGGRMFAPTK WRRWH                          ARGH IE +PE+PLVV
Sbjct: 101 MCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVV 160

Query: 363 ADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMXNRRRIQRKGP 521
           +D  + + KT  A+  L+++ A+ D  K   S  +R GKGKM NRR I RKGP
Sbjct: 161 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGP 213


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  212 bits (518), Expect = 1e-55
 Identities = 100/173 (57%), Positives = 116/173 (67%)
 Frame = +3

Query: 3   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 182
           D+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGN
Sbjct: 40  DIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGN 99

Query: 183 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 362
           MCRGGRMFAPTK WRRWH                          ARGH IE +PE+PLVV
Sbjct: 100 MCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVV 159

Query: 363 ADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMXNRRRIQRKGP 521
           +D  + + KT  A+  L+++ A+ D  K   S  +R GKGKM NRR I RKGP
Sbjct: 160 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGP 212


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 191 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASPGCSRQ 370
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523

Query: 371 S 373
           S
Sbjct: 524 S 524


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 191 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASPGCSRQ 370
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522

Query: 371 S 373
           S
Sbjct: 523 S 523


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 207 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 88
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 207 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 88
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -1

Query: 518 SLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKLGN 339
           SLT+D    +  T  STKTL L   +D+   L A   ++     ++ L       G  G+
Sbjct: 108 SLTMDYLLSSSQTADSTKTLSLSRAEDVHTFLSAAITNEQT--CLEGLKSTASENGLSGD 165

Query: 338 LFNN 327
           LFN+
Sbjct: 166 LFND 169


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 195 HHDTCYRRHPDRTYEYHHHGHAEF 124
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 60  VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 224
           + +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F     W
Sbjct: 81  IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 195 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 112
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 102 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 197
           G GR      R +GGG  + G G+ G+ CR G
Sbjct: 88  GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +3

Query: 63  SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 194
           S+  G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 302 SQGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 397 CLVLLISWTLSATTRGSSGIFS 332
           CLVLL+S   +A T+  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,914
Number of Sequences: 28952
Number of extensions: 219760
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)