Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314A03f
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 28 0.44
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 0.44
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 1.8
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 1.8
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 2.3
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 3.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 4.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 24 5.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 5.4
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 24 7.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 7.1
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 24 7.1
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 23 9.4
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 23 9.4
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 23 9.4
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 23 9.4
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.9 bits (59), Expect = 0.44
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 87 RCLVFLRRKLESVREKKLDSRFNTFYYIYTLNMYNKKTTK 206
RC+VFL L KK R+ + +Y L+ K K
Sbjct: 272 RCIVFLLPTLSEYNPKKFQQRYLDSFMVYLLSHIRKDKEK 311
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 0.44
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 249 NLQNMFSFVIKQFISWLFFYYT-YLMYKCNKMY*IW 145
N++N F F+SWLFF +T +++Y+ + Y I+
Sbjct: 132 NVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIF 167
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 5 VDSEEAEDSPWTCSRPTVSKILCMDICQV 91
+DSE+ +D P T S + D+C++
Sbjct: 488 IDSEDTDDDPTVSRSKTHSPVYVQDLCKM 516
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 270 YATSLALNLQNMFSFVIKQFISWLFFYYTYLMYKCNK 160
Y + LQ+ + Q + L+FYY KCN+
Sbjct: 149 YIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNR 185
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 240 NMFSFVIKQFISWLFFYY-TYLMYKCNKMY 154
+MFS ++ QF S L+FY T+ Y +Y
Sbjct: 139 DMFSSILTQFASLLYFYISTWEEYHTGTLY 168
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 3 WWIQRRQKIAHGPAADLQCPKFCVWI 80
WWI+RR I H +L+C K ++
Sbjct: 123 WWIERRHHIRH----NLKCDKVIFYV 144
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 4.1
Identities = 8/35 (22%), Positives = 19/35 (54%)
Frame = -2
Query: 277 VCICNKFSFKSTKYVQFCY*TIYILVVFLLYIFNV 173
V + +KF F ++ FC+ + +I+ +I ++
Sbjct: 243 VVVPSKFQFSQKTFIIFCFLSSFIITGVFFFIMSI 277
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 270 YATSLALNLQNMFSFVI 220
Y TSL L+++ +FSF+I
Sbjct: 277 YVTSLTLDIEVIFSFII 293
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -3
Query: 258 LALNLQNMFSFVIKQFISWLFFYYTYLMYKCNKMY 154
L L + +F I+ F W FF++ + + C + +
Sbjct: 59 LKLPYHHHHTFTIEAFFYWFFFFFFFFSH-CRRFH 92
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 111 FFLKIPDTWQISIHR----ILDTVGLLQVHGLSSASSESTT 1
F K+P+ WQ+++ +LD +G LQ H + S T
Sbjct: 153 FLNKVPENWQVTLPETTDFLLDQLGNLQ-HAVKRVVEASPT 192
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.8 bits (49), Expect = 7.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -2
Query: 271 ICNKFSFKSTKYVQFCY 221
+CN FSF ++ ++Q C+
Sbjct: 1539 LCNGFSFTTSTFLQCCW 1555
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 84 QISIHRILDTVGLLQVHG 31
+IS HRI T+GL+++ G
Sbjct: 53 KISSHRIYGTLGLIELEG 70
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 55 SVQNSVYGYLPGVWYF*EENLKV 123
S++NS YG+L G + + NL++
Sbjct: 303 SLKNSTYGFLLGNYSYKNSNLRL 325
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 317 KILFYIKLNLHLDSLYMQ 264
+IL++IK NL + SLY +
Sbjct: 149 RILYFIKRNLGIGSLYKE 166
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 302 IKLNLHLDSLYMQQV*L*IYKICSVLLLNNLYLGC 198
I NL+LD++ + + K+CSV L N C
Sbjct: 55 ISQNLYLDTINRKLLDFDFEKVCSVSLTNLSVYAC 89
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 129 HAHFQVFFLKIPDTWQISIHRILDTVGLLQVHGLSSASS 13
H+H + F + + + R +TVG L + GLS++++
Sbjct: 269 HSHIRDFAVYDEASVSLEGGRYCETVGWLSIDGLSASNA 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,854
Number of Sequences: 5004
Number of extensions: 26015
Number of successful extensions: 79
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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