Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A03f
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    27   2.9  
03_06_0459 + 34085134-34086269,34086471-34086717                       27   3.8  
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894...    27   5.0  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    27   5.0  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    26   6.6  

>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 97  TRHLANIHTQNFGHCRSAAGPWAIFCLL 14
           +R LA    Q+ GH     GPW++FC+L
Sbjct: 588 SRALAQYDAQDHGH-----GPWSVFCVL 610


>03_06_0459 + 34085134-34086269,34086471-34086717
          Length = 460

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 123 VREKKLDSRFNTFYYIYTLNM 185
           V EK+LD+  N  Y+++TLN+
Sbjct: 26  VDEKRLDTGGNGIYFVFTLNL 46


>06_03_1218 -
           28488661-28488757,28488924-28488988,28489352-28489448,
           28489647-28489852,28489853-28490152
          Length = 254

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 157 VLNLESNFFSRTLSSFLLKNTRHLANIHTQN 65
           V+N+ SNFF RT+S    +  ++L  ++  N
Sbjct: 101 VMNISSNFFHRTISISSTEMMKNLVALNASN 131


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 177 MYKCNKMY*IWNPTSFHAHFQVFFLKIPDTWQISIHRILDT 55
           + K N+M  I  P +  A+  V   K P+ W + + R +D+
Sbjct: 470 LIKINRMSWIVTPAADEANAHVCEEKDPENWHVQVFRSIDS 510


>02_03_0307 + 17546263-17546299,17546522-17548018,17548859-17548949,
            17549054-17549621,17550591-17550670,17550993-17551077,
            17551172-17551263,17551355-17551423,17551587-17551655,
            17552217-17552510,17552761-17552797,17552883-17552972,
            17553520-17553585,17553704-17553818,17553902-17553940,
            17554519-17554700
          Length = 1136

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 60   PKFCVWIFARCLVFLRRKLESV 125
            P+ C+W   RC+V+    ++S+
Sbjct: 1040 PRECIWNLDRCIVYFGSSIQSI 1061


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,832,826
Number of Sequences: 37544
Number of extensions: 138028
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)