Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A03f
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37134| Best HMM Match : Ank (HMM E-Value=3.8e-11)                   30   0.54 
SB_37038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)               27   2.9  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              26   6.6  
SB_36563| Best HMM Match : DUF288 (HMM E-Value=5.3)                    26   6.6  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.6  
SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2)                26   8.7  
SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25)                   26   8.7  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   8.7  
SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25)                   26   8.7  
SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_37134| Best HMM Match : Ank (HMM E-Value=3.8e-11)
          Length = 160

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 189 YTYLMYKCNKMY*IWNPTSFHAHFQVFFLKIPDTWQISIHRILDTVGL 46
           Y +  Y C+    I+ P++ H H ++  +     ++  IH++ DT G+
Sbjct: 49  YLFDNYSCHIKIAIFAPSTLHRHIKIGLMPCYGLFEYFIHQVKDTNGI 96


>SB_37038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 147 WNPTSFHAHFQVFFLKIPDTWQISIHRILDTVGLLQVHGLSSASSEST 4
           W P+  H   ++    I  TWQ S HR  D +  LQ  G +S+ + +T
Sbjct: 28  WQPSHRHDQHRIDMTSIASTWQPS-HR-HDQIEFLQPGGSTSSRAAAT 73



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 147 WNPTSFHAHFQVFFLKIPDTWQISIHR 67
           W P+  H H ++    I  TWQ S HR
Sbjct: 8   WQPSHRHYHHRIDMTSIASTWQPS-HR 33


>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
          Length = 463

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 291 LTSR*FVYATSLALNLQNMFSFVIKQFISWLFFYYTYLMYKCNKMY 154
           L SR F+    + +N+Q   S   +  ++ LFF+ + L++K NK++
Sbjct: 193 LASR-FIALDPMRVNIQQTLSSTREVQLNRLFFWGSVLLFKLNKVF 237


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 99  FLRRKLESVREKKLDSRFNTFYYI 170
           FL  K   VR+K+ +  FN FYY+
Sbjct: 525 FLLEKSRVVRQKEGEGTFNIFYYL 548


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 157 VLNLESNFFSRTLSSFLLKNTRHLANIHTQNFGHC 53
           ++NL  N F+   ++ + K    L N+   NFG C
Sbjct: 447 IINLNDNIFTEKGATSMAKVLPTLNNVEVINFGDC 481


>SB_36563| Best HMM Match : DUF288 (HMM E-Value=5.3)
          Length = 497

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 121 LSSFLLKNTRHLANIHTQNFGHCRSAAGPWAIFC 20
           +S F+   T HL ++HT  F  C       AI C
Sbjct: 145 VSGFVSPKTHHLIHVHTIVFASCDRTVKQAAIGC 178


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 18   RQKIAHGPAADLQCPKFCVWIFARCLVFLRRKLESVREKKL 140
            RQ +A      L+C K C+ +       LR +LES  +K +
Sbjct: 1314 RQHMAEASRTSLKCRKACLQLHEDSKARLRTELESEHQKAI 1354


>SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2)
          Length = 445

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 147 WNPTSFHAHFQVFFLKIPDTWQISIHRILDTVGLLQVHGLSSASSEST 4
           W PT F   FQV   +   T+++   R L T  +     L +   +ST
Sbjct: 351 WKPTRFLNPFQVKSTRFLQTYRVKSTRFLQTYRMKSTQFLQTYRVKST 398


>SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 276 FVYATSLALNLQNMFSFVIKQFISWLFFYYTYLMYKCN 163
           F Y   L + L N    V+  F+ ++FF+  +   K N
Sbjct: 41  FAYVGGLVVFLSNFLRIVVHYFLRFVFFFLGWWKVKQN 78


>SB_54615| Best HMM Match : rve (HMM E-Value=4.4e-25)
          Length = 460

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 KLESVREKKLDSRFNTFYYIY 173
           KLE +REK   S+ NT  YI+
Sbjct: 15  KLEELREKSKSSKSNTTLYIF 35


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 121  LSSFLLKNTRHLANIHTQNFGHCRSAAGPWAI 26
            L++  + + RH AN    N G  R+  G WA+
Sbjct: 1309 LTASSIFDARHSANRGRLNIGRTRAGIGAWAV 1340


>SB_31807| Best HMM Match : rve (HMM E-Value=4.4e-25)
          Length = 460

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 KLESVREKKLDSRFNTFYYIY 173
           KLE +REK   S+ NT  YI+
Sbjct: 15  KLEELREKSKSSKSNTTLYIF 35


>SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 98 YQTPGKYPYTEF 63
          YQTP +YPYT +
Sbjct: 35 YQTPSRYPYTAY 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,481,964
Number of Sequences: 59808
Number of extensions: 165747
Number of successful extensions: 388
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)