Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A03f
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical pr...    31   0.21 
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U70848-4|AAB09108.1|  869|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical
           protein F21F3.3 protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 276 FVYATSLALNLQNMFSFVIKQFISWLFF 193
           F++A S  + L N  SFVI  F++W FF
Sbjct: 229 FIWAVSTQIVLCNPISFVIYTFVTWRFF 256


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 111 FFLKIPDTWQISIHRILDTVGL 46
           FFL++ D+WQ  +H IL  V L
Sbjct: 261 FFLQMSDSWQNELHEILSKVRL 282


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 6   WIQRRQKIAHGPAADLQCP-KFCVWIFARCLVFLRRKLES-VREKKLDSRFNTFYYIYTL 179
           W  R + +AH    D  CP   C +IF      +R   E   +   LDSR     Y Y L
Sbjct: 166 WSSRNEYVAHLHGRDHMCPDPVCKYIFETNEKCIRHFFEQHYKHLFLDSRHLLLNYKYFL 225

Query: 180 NMYNKK 197
               K+
Sbjct: 226 RYQEKQ 231


>U70848-4|AAB09108.1|  869|Caenorhabditis elegans Hypothetical
           protein C43G2.2 protein.
          Length = 869

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 96  VFLRRKLES-VREKKLDSRFNTFYYIYTLNMYNKK 197
           VF R    +  REK L+ R++ F Y++    + KK
Sbjct: 686 VFKRSSTRAPTREKNLNRRYSAFNYVHCFKTFTKK 720


>Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical
           protein F13A7.13 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 237 MFSFVIKQFISWLFFYYTYLMYKCNKMY 154
           +F F      SWL FY T +M+K  K +
Sbjct: 33  LFIFFSMVTCSWLSFYMTIVMWKVKKFH 60


>Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical
           protein R07B7.12 protein.
          Length = 550

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 256 SFKSTKYVQFCY*TIYILVVFLLYIF 179
           SF+S   +Q C+  +++L +F L +F
Sbjct: 40  SFRSNPSLQMCFIIVFLLFIFSLIMF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,376,704
Number of Sequences: 27780
Number of extensions: 145402
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)