Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A03f
         (335 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat...    27   2.4  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    26   5.4  
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    26   5.4  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    26   7.2  
At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    25   9.5  
At3g58280.1 68416.m06497 hypothetical protein                          25   9.5  
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    25   9.5  

>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2138

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 3    WWIQRRQKIAHGPAADLQCPKFCVWIFARCLVFLRR 110
            WW++      H PA  L   K    +FA  L  LRR
Sbjct: 1746 WWLRSPSSKLHDPALHLMLHKVMQKVFALLLTDLRR 1781


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = -3

Query: 234 FSFVIKQFISWLFFYYTYLMYKCNKMY*IWNPTSFHAHFQVFFLKIPDT----WQISIHR 67
           FS +    ++W  + Y YL Y  + ++   N   + A F+ F L+I       W      
Sbjct: 112 FSLLFVALLAWSLYNYLYLSYHVH-LHNDDNAKIWQAKFRAFGLRIGYVGNICWAFLFFP 170

Query: 66  ILDTVGLLQVHGLSSASS 13
           +     +L + GL+S SS
Sbjct: 171 VTRASTILPLVGLTSESS 188


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 69  CVWIFARCLVFLRRKLES 122
           C+++FA C V++R+ +ES
Sbjct: 205 CIYVFAFCWVYIRKIMES 222


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 3    WWIQRRQKIAHGPAADLQCPKFCVWIFARCLVFLRR 110
            WW+       H PA  L   K    +FA  L  LRR
Sbjct: 1796 WWLCSPSSKLHDPALHLMLHKVMQKVFALLLTDLRR 1831


>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 270 YATSLALNLQNMFSFVIKQFISWLFFYYTYL 178
           +AT L+ N   +   ++  F+ WL  ++ +L
Sbjct: 6   FATKLSRNTNRITVILVYAFLEWLLMFFIFL 36


>At3g58280.1 68416.m06497 hypothetical protein
          Length = 196

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 84 QISIHRILDTVGLLQVHGLSSASSE 10
          ++ +H  +DT+   QV  LS  SSE
Sbjct: 25 EVEVHEFIDTLNASQVEELSDDSSE 49


>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 171 KCNKMY*IWNPTSFH 127
           +CN+M  +W PT FH
Sbjct: 209 RCNQMDHVWVPTDFH 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,676,019
Number of Sequences: 28952
Number of extensions: 122652
Number of successful extensions: 308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)