Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A02f
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   9.5  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 259  LFTYLSFSLDLSMQQ*FYSVTTVTAHKT-GNINKITGYGLTGFFQK 393
            +F+Y+  S +   Q    S T++  HKT  N++ I GY +  FF++
Sbjct: 940  MFSYIYVSTERMCQDVVISTTSIL-HKTIVNLDTIKGYSVLSFFRE 984


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 168 FFFLKNLLKYSILYARTFWRGSKMLSYVSCF--IYLLKFFF 284
           FFFL   L +S  ++  F+     + Y S F  ++ L FFF
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 144  RRLCS*YSFFFLKNLLKYSILYARTFWRGSKMLSYVSCFIYLLKFFFRFKHATIVL 311
            +R+    SFFF KN++   IL+   F+      +Y+  + Y++ F   F    +++
Sbjct: 1087 KRMSQMISFFFYKNVIWTFILFWYQFYNEFDG-NYIFDYTYVMLFNLLFTSLPVII 1141


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 42  RNLPIGTNTNITYLKDILLSARTDWIEN 125
           +  P+  NT+ T  KD++     +W++N
Sbjct: 657 QKFPLKVNTSATLSKDLMSLPINEWVKN 684


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 240 LSYVSCFIYLLKFFFRFKH--ATIVLFSNN 323
           L Y+SC ++ + +FF  K+    ++LFS++
Sbjct: 114 LGYLSCGLFFVSYFFSLKNNPFCLMLFSSH 143


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 54  IGTNTNITYLKDILLSARTDWIENSGLKRPRRLCS 158
           +G N N +Y+ ++  S  + W   SGL   R   S
Sbjct: 82  VGDNNNDSYIINVPFSTESAWSSPSGLYLQRHRSS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,046
Number of Sequences: 5004
Number of extensions: 33036
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)