Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A02f
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     31   0.57 
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   2.3  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 27   5.3  
10_08_0124 + 14992399-14993478                                         27   9.3  
04_01_0488 - 6419731-6420843                                           27   9.3  

>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +3

Query: 39  CRNLPIGTNTNITYLKDI-LLSARTDWIENS-GLKRP----RRLCS*YSFFFLKNLLKYS 200
           CR LP+ T T  + L D+ +L+ +   + NS GL  P     R+ S  SF  L N LK  
Sbjct: 363 CRGLPLATLTLASILADVPMLAEKWKQVHNSIGLATPGENMNRILS-LSFHDLPNHLKTC 421

Query: 201 ILYARTF 221
           +LY   F
Sbjct: 422 LLYLSIF 428


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 133 KPEFSIQSVRADSNISFK*VMLVLVPIGKFLHRT 32
           K + S    RAD+N   K + L+++P+G+ L R+
Sbjct: 315 KTKISPIESRADTNAQLKKIRLIMMPLGRILSRS 348


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 216 TFWRGSKMLSYVSCFIYLLKFFFR 287
           +FW G  ++  V+CFI LL FFFR
Sbjct: 828 SFW-GLFLICGVACFIALLIFFFR 850


>10_08_0124 + 14992399-14993478
          Length = 359

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 313 SVTTVTAHKTGNINKITGYGLT 378
           S TT+TA +T +I KI GY  T
Sbjct: 19  STTTITAERTYHIIKIPGYSST 40


>04_01_0488 - 6419731-6420843
          Length = 370

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 307 FYSVTTVTAHKTGNINKITGYGLTGFFQKALRAHFNLSVKRLYHP 441
           +YSV   T  +  ++  +TG+ + GF+Q      + L +   + P
Sbjct: 123 YYSVCNPTTRQFADLPMLTGFFVMGFYQHRPTGEYRLLLYYQFRP 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,965,431
Number of Sequences: 37544
Number of extensions: 170805
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)