Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A02f
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                29   1.4  
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              27   9.6  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 258 NNSHNLTSCFPAKKYGHRECCISIDF*EKK-RNIKNTVSVVFLNLNFQSNQFEQTAIYLL 82
           N S NL+     KKY +R   +SID   KK  N    +S+      + +   E  A Y +
Sbjct: 480 NRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSREDAAEYFM 539

Query: 81  N 79
           N
Sbjct: 540 N 540



 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 258 NNSHNLTSCFPAKKYGHRECCISIDF*EKK 169
           + S NL+     KKY +R C +SID   KK
Sbjct: 416 SRSRNLSIDLETKKYMNRSCNLSIDLKTKK 445



 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 258 NNSHNLTSCFPAKKYGHRECCISIDF*EKK 169
           N S NL+  F  KKY +R   +SID   KK
Sbjct: 464 NQSRNLSIDFETKKYMNRSRNLSIDLETKK 493


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 48  LPIGTNTNITYLKDI--LLSARTDWIENSGLKRPRRLCS*YSFFFLKN--LLKYSILYAR 215
           L +G   + TY+  +  +   R  WI    +K PR L     FFF +N  +  + + Y R
Sbjct: 21  LNVGGQKHETYVSTLASVPDTRLAWIAERSMKDPRPLAQRREFFFDRNPSIFTHVLNYYR 80

Query: 216 T 218
           T
Sbjct: 81  T 81


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 183 NLLKYSILYARTFWRGSKMLSYVSCFIYLLKFFFRFKHATIVLFSNNCDSA*DWQHKQNH 362
           N LKY I      W G  +  ++SC  ++   +   K   ++ + N  +      HK +H
Sbjct: 87  NYLKYKIDVLLDMWNGDALQIFISCLFFVAISWIITK---LLSWRNRKELRVADPHKGHH 143

Query: 363 W 365
           W
Sbjct: 144 W 144


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 132 LKRP-RRLCS*YSFFFLKNLLKYSILYARTFWR 227
           +K P R+LC   S FF++N L  SIL+    WR
Sbjct: 564 VKEPTRKLCLKVSQFFMENNLCDSILWRSIKWR 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,762
Number of Sequences: 59808
Number of extensions: 211461
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)