Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314A02f
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 190 NRFLRKKKEY*EHSLRGLFKPEFSIQSVRADSNI 89
           NRF+ +  E     L+  ++  FS+   + D+ I
Sbjct: 207 NRFINENSELLFKELQAAYEETFSLVFTKIDNEI 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 259 LFTYLSFSLDLSMQQ*FYSVTTVTAHKTGNINKITGYGLTGFFQKALRAHFNLS 420
           L  + SF +D S+ + FY     T       N+      TG  Q     H NL+
Sbjct: 359 LHNHQSFGMDFSLNEDFYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGIWHSNLT 412


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 158 LIFLFFSQKSIEIQHS-LCPYFLAGKQDV 241
           LI+ FF   S  IQH    P  LA K ++
Sbjct: 336 LIYDFFKDSSFRIQHHFFYPDPLASKYEL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,824
Number of Sequences: 438
Number of extensions: 1977
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)