Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313H12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0339 + 28549449-28549529,28549768-28549914,28550027-285500... 131 4e-31
09_02_0241 + 6179869-6180116,6180406-6180436,6182038-6182190,618... 122 2e-28
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 103 1e-22
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 103 1e-22
03_06_0366 + 33408671-33408745,33409342-33409398,33410398-334104... 102 2e-22
06_03_0542 + 21959533-21959785,21960732-21960846,21962815-219629... 100 6e-22
02_02_0075 - 6572385-6572558,6573416-6573607,6574553-6574630,657... 99 2e-21
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075... 73 2e-13
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 71 6e-13
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885... 70 1e-12
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143 69 2e-12
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283... 69 2e-12
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 55 3e-08
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 43 2e-04
08_02_0893 + 22327485-22327671,22327756-22328627 36 0.015
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 33 0.14
10_08_0529 - 18565749-18565804,18566022-18566128,18566206-185664... 27 6.9
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 27 6.9
03_06_0682 - 35516081-35518303 27 9.1
>01_06_0339 +
28549449-28549529,28549768-28549914,28550027-28550094,
28550771-28550828,28551474-28551584,28551668-28551718,
28552308-28552451,28552570-28552665,28552781-28552852,
28553392-28553475
Length = 303
Score = 131 bits (316), Expect = 4e-31
Identities = 60/101 (59%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = -3
Query: 393 SVSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMF-DKRLVTVWSAPNYCYR 217
+VSPRGAGWLFG +VT F + N+L L+CRAHQLV +G KYMF DK LVTVWSAPNYCYR
Sbjct: 203 AVSPRGAGWLFGSRVTAEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYR 262
Query: 216 CGNVASILEFNTVHDRTARLFQAVPDTEREVPPQHTTPYFL 94
CGNVASIL F+ +R + F + + P+ PYFL
Sbjct: 263 CGNVASILSFSETMEREVKFFTETEENNQMRGPRTAVPYFL 303
>09_02_0241 +
6179869-6180116,6180406-6180436,6182038-6182190,
6182921-6182983,6183396-6183664,6184055-6184133,
6184213-6184263
Length = 297
Score = 122 bits (293), Expect = 2e-28
Identities = 55/100 (55%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+LFG V F + N++ ICRAHQLV +G+K+MF+ ++VTVWSAPNYCYRCG
Sbjct: 198 LSPRGAGFLFGGNVVSSFNHTNNIDYICRAHQLVMEGFKWMFNNKIVTVWSAPNYCYRCG 257
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHTTP-YFL 94
NVA+ILE + ++ R+F+A P R VP + P YFL
Sbjct: 258 NVAAILELDENLNKQFRVFEAAPHESRGVPAKRPAPDYFL 297
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 103 bits (246), Expect = 1e-22
Identities = 46/99 (46%), Positives = 66/99 (66%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+ FG ++E F + N+L L+ RAHQLV +GY + ++++VT++SAPNYCYRCG
Sbjct: 269 ISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCG 328
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHTTPYFL 94
N+ASILE + + T F+ P + T YFL
Sbjct: 329 NMASILEVDDCRNHTFIQFEPAPRRGEPDVTRRTPDYFL 367
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 103 bits (246), Expect = 1e-22
Identities = 46/99 (46%), Positives = 66/99 (66%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+ FG ++E F + N+L L+ RAHQLV +GY + ++++VT++SAPNYCYRCG
Sbjct: 224 ISPRGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCG 283
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHTTPYFL 94
N+ASILE + + T F+ P + T YFL
Sbjct: 284 NMASILEVDDCNSHTFIQFEPAPRRGEPDVTRRTPDYFL 322
>03_06_0366 +
33408671-33408745,33409342-33409398,33410398-33410481,
33410575-33410646,33410768-33410839,33411011-33411051,
33411517-33411583,33411673-33411864,33411947-33412036,
33412111-33412218,33412513-33412578
Length = 307
Score = 102 bits (244), Expect = 2e-22
Identities = 46/99 (46%), Positives = 66/99 (66%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+ FG ++E F + N+L LI RAHQLV +G+ + ++++VT++SAPNYCYRCG
Sbjct: 209 ISPRGAGYTFGQDISEQFNHTNNLRLIARAHQLVMEGFNWAHEQKVVTIFSAPNYCYRCG 268
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHTTPYFL 94
N+ASILE + + T F+ P + T YFL
Sbjct: 269 NMASILEVDDCREHTFIQFEPAPRRGEPDVTRRTPDYFL 307
>06_03_0542 +
21959533-21959785,21960732-21960846,21962815-21962923,
21963027-21963104,21964200-21964391,21964995-21965168
Length = 306
Score = 100 bits (240), Expect = 6e-22
Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+ FG + + F + N LTLI RAHQLV +G+ + DK +VTV+SAPNYCYRCG
Sbjct: 208 ISPRGAGYTFGQDIAQQFNHTNGLTLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCG 267
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHT--TP-YFL 94
N+A+ILE D+ F P R++ P T TP YFL
Sbjct: 268 NMAAILEIGENMDQNFLQFDPAP---RQIEPDTTRKTPDYFL 306
>02_02_0075 -
6572385-6572558,6573416-6573607,6574553-6574630,
6574712-6574820,6575442-6575556,6576280-6576535
Length = 307
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCG 211
+SPRGAG+ FG + + F + N L+LI RAHQLV +G+ + DK +VTV+SAPNYCYRCG
Sbjct: 209 ISPRGAGYTFGQDIAQQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCG 268
Query: 210 NVASILEFNTVHDRTARLFQAVPDTEREVPPQHT--TP-YFL 94
N+A+ILE D+ F P R++ P T TP YFL
Sbjct: 269 NMAAILEIGENMDQNFLQFDPAP---RQIEPDTTRKTPDYFL 307
>01_03_0220 -
13905808-13905831,13906694-13906885,13906960-13907519,
13910007-13910187
Length = 318
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = -3
Query: 387 SPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCGN 208
S RG FG F+ NDL LICRAHQ+V DGY++ +RLVT++SAPNYC N
Sbjct: 217 SDRGVSCTFGADKLVEFLEKNDLDLICRAHQVVEDGYEFFAQRRLVTIFSAPNYCGEFDN 276
Query: 207 VASILEFN 184
++L +
Sbjct: 277 AGALLSID 284
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -3
Query: 396 RSVSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYR 217
R S RG G FG VT+ F+ N+L L+ R+H++ ++GY+ D +L+TV+SAPNYC +
Sbjct: 380 RGPSKRGVGLSFGADVTKKFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 439
Query: 216 CGNVASILEFNTVHDR-TARLFQAVP 142
GN + + F + F AVP
Sbjct: 440 MGNKGAYIRFTAPELKPNISSFSAVP 465
>03_02_0491 +
8854438-8854657,8854897-8854942,8855268-8855307,
8856025-8856090,8856237-8856318,8857036-8857595,
8857681-8857771,8858300-8858316
Length = 373
Score = 70.1 bits (164), Expect = 1e-12
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = -3
Query: 390 VSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYC 223
++ RG + FG F+ +DL LICRAHQ+V DGY++ D++LVT++SAPNYC
Sbjct: 307 MNDRGVSYTFGADKVSEFLEKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYC 362
>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
Length = 339
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/85 (36%), Positives = 51/85 (60%)
Frame = -3
Query: 381 RGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCGNVA 202
RG + FG F+ +DL LICRAHQ+V DGY++ ++LVT++SAPNYC N
Sbjct: 235 RGVSYTFGADKVAEFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAG 294
Query: 201 SILEFNTVHDRTARLFQAVPDTERE 127
+++ ++ D FQ + ++++
Sbjct: 295 AMM---SIDDSLTCSFQILKPSDKK 316
>02_05_1246 -
35226759-35226860,35227521-35227715,35227804-35228363,
35229299-35229476
Length = 344
Score = 68.9 bits (161), Expect = 2e-12
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = -3
Query: 393 SVSPRGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRC 214
+++ RG + FG F+ +DL LICRAHQ+V DGY++ +++LVT++SAPNYC
Sbjct: 214 AMNDRGVSYTFGPDKVSEFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEF 273
Query: 213 GNVASIL 193
N +++
Sbjct: 274 DNAGAMM 280
>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 55.2 bits (127), Expect = 3e-08
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -3
Query: 381 RGAGWL-FGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYCYRCGNV 205
RG G + FG F N NDL LI RAH+ V DG++ L+T++SA NYC N
Sbjct: 854 RGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNA 913
Query: 204 ASILEFNTVHDRTARLFQAVPD--TEREVPPQH 112
+IL +L +P T E P+H
Sbjct: 914 GAILVLGRDLVVVPKLIHPLPPAITSPETSPEH 946
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -3
Query: 381 RGAGWL-FGCQVTELFMNYNDLTLICRAHQLVNDGYKYMFDKRLVTVWSAPNYC 223
RG G + FG F N L LI RAH+ V DG++ +L+T++SA NYC
Sbjct: 724 RGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYC 777
>08_02_0893 + 22327485-22327671,22327756-22328627
Length = 352
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 381 RGAGWLFGCQVTELFMNYNDLTLICRAHQLVNDGYKYM 268
RG + FG F+N +DL LICRAHQ ++++
Sbjct: 221 RGVSFTFGADKVTEFLNKHDLDLICRAHQASRHRHRHL 258
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 381 RGAGWL-FGCQVTELFMNYNDLTLICRAHQLVNDGYK 274
RG G + FG F N NDL LI RAH+ V DG++
Sbjct: 866 RGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFE 902
>10_08_0529 -
18565749-18565804,18566022-18566128,18566206-18566410,
18566500-18566812
Length = 226
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 204 ASILEFNTVHDRTARLFQAVPDTEREVPPQH 112
A ILE + H R R+ + TE+ + P+H
Sbjct: 11 ARILELDPAHPRAGRVIDDIVRTEKRIFPKH 41
>01_06_1480 - 37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 252 VTVWSAPNYCYRCGNVASILEFNTVH 175
+ +WSA + CY CG V + + N H
Sbjct: 1235 IRLWSARDMCYICGTVETYDQSNGFH 1260
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 224 VTDVVMLPQSWNSTLFMIEQQGYSKQCLTPNEKFLHSILLHISF 93
V DV ML Q W + F+ EQQG +C + K + S L+ SF
Sbjct: 438 VIDVEMLIQLWMANCFIPEQQG---ECPEISGKRIFSELVSRSF 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,047
Number of Sequences: 37544
Number of extensions: 237156
Number of successful extensions: 499
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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