Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 507 CTKCQYDHDKI*CFNCG 457
           C + +Y HD+  C +CG
Sbjct: 473 CEEYEYVHDEYTCMDCG 489


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 255 LVTVWSAPNYCYRCGNVASILEF 187
           L  VW  P  CY+ G  A ++ +
Sbjct: 1   LANVWRFPYLCYKNGGGAFLIPY 23


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 405 LMYRSVSPRGAGWLFGCQVTELF 337
           L+  S   R  GW  GC V  +F
Sbjct: 113 LVISSFMERMIGWEIGCDVYSVF 135


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 405 LMYRSVSPRGAGWLFGCQVTELF 337
           L+  S   R  GW  GC V  +F
Sbjct: 113 LVISSFMERMIGWEIGCDVYSVF 135


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 339 FMNYNDLTLICRAHQLVNDGYK--YMFDKRLV 250
           F  Y D + I  AH++  D Y+  ++ D  LV
Sbjct: 117 FAKYEDCSGIVSAHKIAIDEYERLWVLDSGLV 148


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  KGNME*YAVEELLVRCQALLGITLLFYHEQ 182
           KG+ME + V+ ++ + Q  L   ++  H+Q
Sbjct: 593 KGDMEAFLVKNIIPKLQIALSEFVINPHQQ 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,999
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)