Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313H04f
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 181 4e-47
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 181 4e-47
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.0
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 3.4
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.5
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 6.0
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 6.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 6.0
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.0
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 7.9
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 24 7.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 7.9
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 24 7.9
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 181 bits (440), Expect = 4e-47
Identities = 85/121 (70%), Positives = 96/121 (79%)
Frame = +3
Query: 42 YXFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 221
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 222 GVIVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQP
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQP 132
Query: 402 A 404
A
Sbjct: 133 A 133
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 181 bits (440), Expect = 4e-47
Identities = 85/121 (70%), Positives = 96/121 (79%)
Frame = +3
Query: 42 YXFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 221
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 222 GVIVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQP
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQP 132
Query: 402 A 404
A
Sbjct: 133 A 133
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 77 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 181
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 3.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 377
+++ L I+ K +NI++EH+ S Q L +E+ EA GK
Sbjct: 799 LISPTQLLDILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 303 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 398
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 377 LAGSLGFLQ*PLILFDSLKEVLSALGV 297
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 200 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 72
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 6.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 286 SMSSTPSADKTSLRE 330
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 6.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 401 WLSLQVDGLAGSLGF 357
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 221 RCDCQQACSXKDYTEAHQYPC*ACQALQVQTRLP 322
R + +Q + K+YTE H + ++ +TRLP
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 224 TESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVS 114
TES+++H + A CL ++ H + + V V+
Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 189 GRVYNVTAHALGVIVN 236
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 12 TPRVTAAAPVYXFARRFRTHGTIPLSTYMKVYKVGDIVDIRG 137
TP A + F R++ P+S+Y+ K GD +++RG
Sbjct: 94 TPLYLDANELKFFIRKYEEG---PVSSYIHSKKEGDTIELRG 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,550
Number of Sequences: 5004
Number of extensions: 29336
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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