Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313H04f
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 149 6e-37
03_01_0290 + 2246791-2247027,2248089-2248346 149 6e-37
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 30 0.81
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 1.4
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 1.9
01_07_0098 - 41071997-41072248,41072387-41072519,41072694-410728... 29 1.9
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 1.9
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 2.5
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 3.3
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 4.3
03_06_0445 - 33982018-33982965,33984308-33984463 27 4.3
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 4.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 27 4.3
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 27 4.3
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 5.7
05_02_0096 - 6568030-6568252,6570998-6571281 27 5.7
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 27 5.7
11_06_0195 - 21138029-21138389,21139796-21140052 27 7.6
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 7.6
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778... 27 7.6
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 27 7.6
06_03_1007 + 26869731-26870429,26871262-26871387 27 7.6
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 7.6
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 149 bits (362), Expect = 6e-37
Identities = 67/118 (56%), Positives = 92/118 (77%)
Frame = +3
Query: 48 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
FAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+TGRV+NVT A+GV
Sbjct: 15 FARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGV 74
Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
+NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQP 132
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 149 bits (362), Expect = 6e-37
Identities = 67/118 (56%), Positives = 91/118 (77%)
Frame = +3
Query: 48 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
FAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+TGRV+NVT A+GV
Sbjct: 15 FARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGV 74
Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
+NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQP 132
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 29.9 bits (64), Expect = 0.81
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = +2
Query: 86 LHVHESVQSWRHCRHQRQWCSSKGYAT------QSIPWKDRSRVQRDCSCSRCDCQQACS 247
LH H+ R C+ R S T K ++ CSCS+ D +CS
Sbjct: 232 LHTHQVTDENRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEPCSCSKDDTDSSCS 291
Query: 248 XKDYTEAHQY 277
D A Y
Sbjct: 292 LADEHHARHY 301
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 113 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 214
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 146 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSXKDYTE 265
+S G + Q P + R + Q D SC RC C+++ K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477
>01_07_0098 -
41071997-41072248,41072387-41072519,41072694-41072886,
41072975-41073049,41073140-41073266,41073613-41073833,
41073957-41074110
Length = 384
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 161 HTLLNCTIASDVYNVSNFVHFHVRGERNSSM-CAEPASEXVHW 36
H+L + +SDVY+ F+ + G+ +S+ +EP VHW
Sbjct: 259 HSLAQLSESSDVYSFGVFLLELITGKEAASLISSEPREPLVHW 301
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 105 YKVGDIVDIRGNGAVQKGMPHKVY 176
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 113 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 208
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 291 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 398
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 RVTAA-APVYXFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGR 194
++TA AP + F T G IP Y+ G + + +G + G PHK+ R
Sbjct: 95 KITADDAPGETWHMVFSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------R 141
Query: 195 VYNVTAHALG 224
+Y++ + ALG
Sbjct: 142 LYSIASSALG 151
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 5 MTNSKGYRRGTSVLVRSQVPHTWNYSALHVHESVQS 112
M +G R T VLV +QV Y H H +QS
Sbjct: 35 MRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQS 70
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 256 LYRSASISVLSMSSTPSADKTSLRESKRM 342
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.5 bits (58), Expect = 4.3
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = +2
Query: 131 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSXKDYTEAHQYPC*ACQAL 301
+++W C SK YA QS WK ++ RCDC S +D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKTCGSREY-RCDCGTLFSRRDSFITHRAFCDALAEE 178
Query: 302 QVQTRLP*ESQRE*EATEGSQGCRQDRQP 388
+ R + + T S G + P
Sbjct: 179 SAKARAAPPPPADEDGTSASAGAPPPQAP 207
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 131 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSXKDYTEAHQYPC 283
+++W C SK YA QS WK +++ C RCDC S KD H+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 156 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVLXRIIPKRINIRVEHVKHSKC 308
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>05_02_0096 - 6568030-6568252,6570998-6571281
Length = 168
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 101 FHVRGERNSSMCAEPASEXVHWCRGG 24
F VRG R +C E A W GG
Sbjct: 89 FSVRGNRRCEICGETAENITGWGGGG 114
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 240 RVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 359
+VL + +P+ +NI + ++HSK + ++R E + +L+E
Sbjct: 186 KVLDKDVPRALNILADILQHSKLEESRIER--ERDVILRE 223
>11_06_0195 - 21138029-21138389,21139796-21140052
Length = 205
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 116 RHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 223
RH R R CS K ++ +PW +Q DC C R
Sbjct: 161 RHQRVTRLPCSHKYHSECVLPW---LAIQPDCPCCR 193
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 146 SSKGYATQSIPWKDRSR-VQRDCSCSRCDCQQAC 244
S++G A S W ++ V + +C C C+ AC
Sbjct: 1166 SNEGSAHNSSFWSEKDGCVYKPVTCQTCSCKNAC 1199
>09_04_0688 +
19475847-19477034,19477133-19477384,19477778-19477858,
19477907-19478072,19479009-19479445,19479781-19479837
Length = 726
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/77 (16%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -1
Query: 290 MLNTDIDALRYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLN-CTIASDVYNVS 114
++ ++ AL ++ + + ++ +SH++HA + ++Y + L++ C N +
Sbjct: 512 VVTANVSALSWSSYDGIFIIAYMDNAASHLIHAGHIDVLYTIHELLISGCKGCRPGQNCN 571
Query: 113 NFVHFHVRGERNSSMCA 63
G +N + C+
Sbjct: 572 LIDDSEKGGRKNMTCCS 588
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 276 IRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
I V ++ KC +D++ E L K + GK+V + + P
Sbjct: 421 IPVWYIVGKKCEEDYIVARSAEEALAKAQEKYGKSVEIYQDP 462
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 259 YRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 381
Y S + + S S +AD + RG R+PR ARP
Sbjct: 65 YESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 107 QSWRHCRHQRQWCSSKG 157
QSW +C +WC +KG
Sbjct: 255 QSWGNCVSVEEWCKNKG 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,574
Number of Sequences: 37544
Number of extensions: 210322
Number of successful extensions: 734
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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