Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H04f
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   2.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   2.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   2.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/52 (17%), Positives = 19/52 (36%)
 Frame = -1

Query: 197 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEXV 42
           H   L  V      +  CT+  + +     +  H++   +SS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 125 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 223
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 125 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 223
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 125 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 223
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 125 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 223
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 134 RQWCSSKGYATQSIPWKDRSRV 199
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 164 WHTLLNCTIASDVYNV 117
           WHT+ NC   + V+ +
Sbjct: 236 WHTVGNCDGLTSVFRI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,159
Number of Sequences: 438
Number of extensions: 1871
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)