SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H04f
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60...   155   8e-39
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi...   155   8e-39
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi...   155   1e-38
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi...   155   1e-38
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.39 
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    29   0.91 
At4g24350.1 68417.m03494 phosphorylase family protein contains P...    29   1.2  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    29   1.2  
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative...    29   1.6  
At5g25320.1 68418.m03004 ACT domain-containing protein contains ...    28   2.1  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    28   2.1  
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim...    27   3.7  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    27   3.7  
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138...    27   3.7  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   4.8  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    27   4.8  
At1g76990.3 68414.m08966 ACT domain containing protein low simil...    27   4.8  
At1g76990.2 68414.m08965 ACT domain containing protein low simil...    27   4.8  
At1g76990.1 68414.m08964 ACT domain containing protein low simil...    27   4.8  
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera...    27   6.4  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    27   6.4  
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa...    26   8.5  
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    26   8.5  
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ...    26   8.5  
At4g24340.1 68417.m03493 phosphorylase family protein contains P...    26   8.5  
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa...    26   8.5  
At1g23520.1 68414.m02956 expressed protein contains Pfam profile...    26   8.5  
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote...    26   8.5  

>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
           ribosomal protein L21 GI:3885884 from [Oryza sativa]
          Length = 164

 Score =  155 bits (377), Expect = 8e-39
 Identities = 69/118 (58%), Positives = 93/118 (78%)
 Frame = +3

Query: 48  FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
           FAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT  A+GV
Sbjct: 15  FARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGV 74

Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
            VNK++  RII KRI++RVEHV+ S+C ++F  R K+N+ L  +AKA G+T++ KRQP
Sbjct: 75  EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQP 132


>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
           to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
           [Arabidopsis thaliana]
          Length = 164

 Score =  155 bits (377), Expect = 8e-39
 Identities = 69/118 (58%), Positives = 93/118 (78%)
 Frame = +3

Query: 48  FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
           FAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT  A+GV
Sbjct: 15  FARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGV 74

Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
            VNK++  RII KRI++RVEHV+ S+C ++F  R K+N+ L  +AKA G+T++ KRQP
Sbjct: 75  EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQP 132


>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
           to ribosomal protein L21 (gb|L38826). ESTs
           gb|AA395597,gb|ATTS5197 come from this gene
          Length = 164

 Score =  155 bits (375), Expect = 1e-38
 Identities = 69/118 (58%), Positives = 92/118 (77%)
 Frame = +3

Query: 48  FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
           FAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT  A+GV
Sbjct: 15  FARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGV 74

Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
            VNK++  RII KRI++RVEHV+ S+C ++F  R K+N+ L   AKA G+T++ KRQP
Sbjct: 75  EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQP 132


>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
           to L21 family of ribosomal protein; amino acid sequence
           is identical to F21M12.8
          Length = 164

 Score =  155 bits (375), Expect = 1e-38
 Identities = 69/118 (58%), Positives = 92/118 (77%)
 Frame = +3

Query: 48  FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 227
           FAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT  A+GV
Sbjct: 15  FARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGV 74

Query: 228 IVNKRVLXRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 401
            VNK++  RII KRI++RVEHV+ S+C ++F  R K+N+ L   AKA G+T++ KRQP
Sbjct: 75  EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQP 132


>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 450

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 272 DALRYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHV 93
           + L++      L  N   S    V     +  + FVW  LLN    SDV+ V   +H   
Sbjct: 335 EVLKHQAIGGFLTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEG 392

Query: 92  RGERN 78
           R ERN
Sbjct: 393 RIERN 397


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = -1

Query: 332 DSLKEVLSALGVLDMLNTDIDALRYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTL 153
           + + E L+  G +       D L++      L  N   S    V  A  +  + F W  +
Sbjct: 320 EEIMEKLNEKGKIVKWAPQQDVLKHRAIGGFLTHNGWSSTVESVCEAVPMICLPFRWDQM 379

Query: 152 LNCTIASDVYNVSNFVHFHVRGERN 78
           LN    SDV+ V   ++   R ERN
Sbjct: 380 LNARFVSDVWMVG--INLEDRVERN 402


>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
           PF01048: Phosphorylase family
          Length = 336

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 131 DVYNVSNFVHFHVRGERNSSM 69
           DV+NV   VHF + G  N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 335 FDSLKEVLSALGVLDMLNTDIDALRYNPXKNTLVDNHTESMSSHVV 198
           FDS  ++L AL VL  +N DI        K  +V+     M+ H V
Sbjct: 482 FDSKPKILQALSVLYRINNDIVTYEREMSKGEVVNGVNSYMNQHGV 527


>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
           adrenodoxin reductase, putative strong similarity to
           Ferredoxin--NADP reductase, chloroplast precursor (EC
           1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
           {Mesembryanthemum crystallinum} SP|P41343, {Spinacia
           oleracea} SP|P00455, [Capsicum annuum] GI:6899972
          Length = 369

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 105 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVLXRIIPKRI 272
           Y+ G  V +  +G  + G PHKV      R+Y++ + ALG + N   +   + + +
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGNSETVSLCVKRLV 174


>At5g25320.1 68418.m03004 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 500

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 235
           C  +GY+  ++  KDR R+  D  C+  D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
            protein belongs to Pfam:PF03372:
            Endonuclease/Exonuclease/phosphatase family; contains 3
            WD-40 repeats (PF00400);similar to Type II
            inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
            (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 267  RINIRVEHVKHSKCRQDFLKRVKENERL 350
            + ++++EHV  S  RQ+F + +K NE++
Sbjct: 920  KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947


>At5g41220.1 68418.m05009 glutathione S-transferase, putative
           similar to emb|CAA10662
          Length = 590

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 65  HTWNYSALHVHESVQSWRHCRHQRQWCS 148
           +T NY +    E   +WR  RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 273 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 386
           N+ ++ +    CRQ F+K + E + R ++E KA  +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666


>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 672

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 GMPHKVYHGKTGRVYNVTAHALGVIVNK 239
           G P K Y+G  GR+    AHAL    NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 110 SWRHCRHQRQWCSS 151
           +WR  RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 131 QRQW-CS--SKGYATQSIPWKDRSRV--QRDCSCSRCDCQQACSXKDYTEAHQYPC 283
           +++W C   SK YA QS  WK  +++   RD    RCDC    S KD    H+  C
Sbjct: 156 EKKWKCEKCSKFYAVQS-DWKAHTKICGTRDY---RCDCGTLFSRKDTFITHRAFC 207


>At1g76990.3 68414.m08966 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 235
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At1g76990.2 68414.m08965 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 235
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At1g76990.1 68414.m08964 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 235
           C  KGY+  ++  +DR ++  D  C+  D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289


>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 272 DALRYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHV 93
           + L++      L  N   S    V     +  + F W  LLN    SDV+ V   +H   
Sbjct: 336 EVLKHRAIGGFLTHNGWNSTVESVCEGVPMICLPFRWDQLLNARFVSDVWMVG--IHLEG 393

Query: 92  RGERN 78
           R ER+
Sbjct: 394 RIERD 398


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 131 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSXKDYTEAHQYPC 283
           +++W C   SK YA  S  WK  S++   C     RCDC    S KD    H+  C
Sbjct: 142 EKKWKCDKCSKKYAVMS-DWKAHSKI---CGTKEYRCDCGTLFSRKDSFITHRAFC 193


>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to  Flavonol synthase (EC
           1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
           grandiflorum} [SP|Q9M547], Leucoanthocyanidin
           dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
           (Anthocyanidin synthase) from Malus spp. [SP|P51091];
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 349

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 111 VGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVT 209
           VGD +++  NG  +  +   V +GK  R+Y  T
Sbjct: 266 VGDTMEVMSNGIYKSPVHRVVLNGKKERIYVAT 298


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 263 RYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDV 126
           RYN   N L+ N++ S+  +V+H     +      +L++CT   DV
Sbjct: 606 RYNRVLNYLIQNNSASILGNVLHNLETLVKKMEPDSLVHCTCDCDV 651


>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 801

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 263 RYNPXKNTLVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDV 126
           RYN   N L+ N++ S+  +V+H     +      +L++CT   DV
Sbjct: 606 RYNRVLNYLIQNNSASILGNVLHNLETLVKKMEPDSLVHCTCDCDV 651


>At4g24340.1 68417.m03493 phosphorylase family protein contains Pfam
           PF01048: Phosphorylase family
          Length = 338

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 131 DVYNVSNFVHFHVRGERNSSM 69
           DV++V   VHF + G  N+SM
Sbjct: 119 DVFSVKGIVHFGIAGNINNSM 139


>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 90  TYMKVYKVGDIVDIRGNGAVQK---GMPHKVYHGKTGRVYNVTAHALGVIVNKRVLXRII 260
           TY ++ ++G+ V     G  Q+    +P K Y  K G +++        ++ + +  +I 
Sbjct: 151 TYEELVELGEAVGTESRGLSQELIETLPTKKY--KFGSIFSRKRAGERCVICQ-LKYKIG 207

Query: 261 PKRINIRVEHVKHSKCRQDFL 323
            +++N+  +HV HS+C   +L
Sbjct: 208 ERQMNLPCKHVYHSECISKWL 228


>At1g23520.1 68414.m02956 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 263

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 50  RSQVPHTWNYSALHVHESVQSWRHCRHQRQW 142
           RS++ +T +     + E ++ WRH   + QW
Sbjct: 29  RSEIKNTDHEERNEMKEQLKLWRHAEKKEQW 59


>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
            kinase, putative similar to receptor-like protein kinase
            INRPK1 GI:1684913 from [Ipomoea nil]
          Length = 1088

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 165  HKVYHGKTGRVYNVTAHALGVIVNKRVLXRIIPKRINI 278
            +K    K   VY+     L ++  KR L R  P+ INI
Sbjct: 969  YKTVRSKESDVYSYGVVLLELVTGKRALDRSFPEDINI 1006


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,845
Number of Sequences: 28952
Number of extensions: 159822
Number of successful extensions: 516
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -