Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   3.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.0  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    25   9.0  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 492 AFVISLLSLRDHRVFFSSEQYADVLLEAVI 403
           AF+ S++ +R H  FF  +Q     +E V+
Sbjct: 310 AFLTSVIRIRKHAEFFQQDQVLQQFIELVV 339


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 100 LLSKYKP*V*PAATMLLQHLCRHHCFQNLRKNHYL-LYVMPPLTICSLSKISLLNIYTNH 276
           +L +Y   V P  T  +  L  ++C  +LRK+ Y+ L +    TI    + S +++ T  
Sbjct: 147 ILGQYTLQVLPEGTAKINPLHENYCLNSLRKDQYVDLAIQFNSTIPKYIQYSHVDLETKE 206

Query: 277 RHLLKSKQR 303
             L++   R
Sbjct: 207 ETLVEVSGR 215


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 303 TDGVERYSDKYKMLALDAKQNKLLDCV--WVNMPT 401
           ++GVE YSD +  +A       + +C+  ++N+P+
Sbjct: 302 SEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPS 336


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 LLQHLCRHHCFQNLRK 192
           L  HLC H CF+N+R+
Sbjct: 85  LAHHLCSH-CFRNIRR 99


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 414 QAKRPRTVPRKRKLDDPEEI--AKRLQTLEKKETLET 518
           QA   + + RKRK + PEE+  AK  +T    E  ET
Sbjct: 429 QADFKQAILRKRKNESPEEVEPAKHQRTDTSTENQET 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,456
Number of Sequences: 5004
Number of extensions: 32801
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)