BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313H02f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 3.0 SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 5.2 SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 9.0 SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 9.0 SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.0 >SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr 2|||Manual Length = 967 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -3 Query: 492 AFVISLLSLRDHRVFFSSEQYADVLLEAVI 403 AF+ S++ +R H FF +Q +E V+ Sbjct: 310 AFLTSVIRIRKHAEFFQQDQVLQQFIELVV 339 >SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr 2|||Manual Length = 1250 Score = 25.4 bits (53), Expect = 5.2 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 100 LLSKYKP*V*PAATMLLQHLCRHHCFQNLRKNHYL-LYVMPPLTICSLSKISLLNIYTNH 276 +L +Y V P T + L ++C +LRK+ Y+ L + TI + S +++ T Sbjct: 147 ILGQYTLQVLPEGTAKINPLHENYCLNSLRKDQYVDLAIQFNSTIPKYIQYSHVDLETKE 206 Query: 277 RHLLKSKQR 303 L++ R Sbjct: 207 ETLVEVSGR 215 >SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 24.6 bits (51), Expect = 9.0 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 303 TDGVERYSDKYKMLALDAKQNKLLDCV--WVNMPT 401 ++GVE YSD + +A + +C+ ++N+P+ Sbjct: 302 SEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPS 336 >SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L32|Schizosaccharomyces pombe|chr 2|||Manual Length = 103 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 145 LLQHLCRHHCFQNLRK 192 L HLC H CF+N+R+ Sbjct: 85 LAHHLCSH-CFRNIRR 99 >SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Manual Length = 628 Score = 24.6 bits (51), Expect = 9.0 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +3 Query: 414 QAKRPRTVPRKRKLDDPEEI--AKRLQTLEKKETLET 518 QA + + RKRK + PEE+ AK +T E ET Sbjct: 429 QADFKQAILRKRKNESPEEVEPAKHQRTDTSTENQET 465 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,828,456 Number of Sequences: 5004 Number of extensions: 32801 Number of successful extensions: 102 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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