Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313H02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0135 + 14070212-14070311,14072207-14072968,14082526-140826... 31 0.42
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 30 1.3
10_02_0076 - 4976601-4976837,4976856-4976900,4976945-4977070,497... 29 1.7
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 4.0
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 28 5.2
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 28 5.2
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759... 27 6.9
08_01_0998 - 10136050-10138356 27 6.9
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 9.1
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 27 9.1
02_01_0069 + 491452-492594 27 9.1
01_05_0645 - 23899579-23904483 27 9.1
>07_03_0135 +
14070212-14070311,14072207-14072968,14082526-14082696,
14082718-14082950,14082966-14083310,14084955-14084966
Length = 540
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +3
Query: 249 QFIEYLHESPAFVKVKTETDGVERYSDKYKMLALDAKQNKLL---DCVWVNMPTELRPQA 419
+FI +HES F +E+ ++KY++ ++Q L D VW+++ + P+
Sbjct: 453 EFILKMHESTKF--------NIEKMTEKYRIAGSKSRQEVKLEPGDLVWLHLRNDRFPEL 504
Query: 420 KRPRTVPRKRKLDDPEEIAKRL 485
++ + +PR D P +I +++
Sbjct: 505 RKSKLMPR---ADGPFKIVEKI 523
>07_03_0014 -
12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 312 VERYSDKYKMLALDAKQNKLL---DCVWVNMPTELRPQAKRPRTVPRKRKLDDPEEIAKR 482
+E+ ++KY++ + +Q L D VW+++ + P+ ++ + +PR D P +I ++
Sbjct: 150 IEKMTEKYRIAGSEGRQEVKLEPGDLVWLHLRKDRFPELRKSKLMPR---ADGPFKIVEK 206
Query: 483 L 485
+
Sbjct: 207 I 207
>10_02_0076 -
4976601-4976837,4976856-4976900,4976945-4977070,
4977179-4977397,4977416-4977529,4977562-4977858,
4980144-4980425
Length = 439
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 336 KMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLD 458
K+L+ + +KLLDCVW +P E AK+ V R D
Sbjct: 294 KLLSNKLELDKLLDCVWRGVPKEKDRTAKQYIRVAFDRMAD 334
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +3
Query: 288 KVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDDPE 467
+VKT+ D +++ K K L++D +L + N +L + R + + D E
Sbjct: 601 RVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEKPDLISLFEDQRIMKQ-----DLE 655
Query: 468 EIAKRLQTLEKKE 506
EI KRL LE KE
Sbjct: 656 EIRKRLYRLESKE 668
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 157 LCRHHCFQNLRKNHYLLYVMPPLTICSLSKISLLNIYTNH 276
L R H + LR H + P + +L+K+ +LN+Y NH
Sbjct: 129 LGRLHRLRILRLAHNTMSDTIPSALGNLTKLEILNLYGNH 168
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 396 PTELRPQAKRPRTVPRKRKLDDPEEIAKRLQ 488
P +P A RP+ R+ + DP IA+RL+
Sbjct: 120 PQPQQPPAPRPKVRARRGQATDPHSIAERLR 150
>11_06_0452 +
23774378-23775054,23775228-23775411,23775911-23775996,
23776116-23777010
Length = 613
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 145 LLQHLCRHHCFQNLRKNHYLLYVMPPLTICSLSKISLLNIYTNHRHLLKSKQRL 306
+L+ L RH CF N + +L +P + IS L + ++ +++RL
Sbjct: 523 ILKFLKRHDCFPNASIAYRILLTIPVTVASAERSISKLKLLKSYLRCTMTQERL 576
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 220 PLTICSLSKISLLNIYTNHRH 282
PLT C L + +L++ NH H
Sbjct: 372 PLTFCQLDSLEILDLSNNHLH 392
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 288 KVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDDPE 467
+VKT+ D +++ K K L++D +L + N +L + + + + D E
Sbjct: 920 RVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKIMKQ-----DLE 974
Query: 468 EIAKRLQTLEKKE 506
EI KRL LE KE
Sbjct: 975 EIRKRLYMLESKE 987
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 288 KVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDDPE 467
+VKT+ D +++ K K L++D +L + N +L + + + + D E
Sbjct: 585 RVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEKPDLMSLFEDQKIMKQ-----DLE 639
Query: 468 EIAKRLQTLEKKE 506
EI KRL LE KE
Sbjct: 640 EIRKRLYMLELKE 652
>02_01_0069 + 491452-492594
Length = 380
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 355 ASSANILYLSEYRSTPSVSVLTLTNAGDSCRYSI 254
A+SA + Y+ + P + ++ T AGDSC Y I
Sbjct: 99 AASAAVRYMPD-PCKPKMEPISFTTAGDSCLYVI 131
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 288 KVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDDPE 467
+VKT+ D +++ K K L++D +L + N +L + + + + D E
Sbjct: 840 RVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKIMKQ-----DLE 894
Query: 468 EIAKRLQTLEKKE 506
EI KRL LE KE
Sbjct: 895 EIRKRLYMLESKE 907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,196
Number of Sequences: 37544
Number of extensions: 192047
Number of successful extensions: 522
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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