Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313H02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1) 31 0.76
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 29 1.8
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18108| Best HMM Match : HA (HMM E-Value=0.059) 28 4.1
SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 27 7.1
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_16029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_37938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
Length = 355
Score = 30.7 bits (66), Expect = 0.76
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +3
Query: 276 PAFVKVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKL 455
P KT+T ++ D+ K A + ++ + P + QA RPR RK+K
Sbjct: 160 PRQASCKTKTSKLQDKQDQEKQAARKRQASRKKK---TSKPQDQDKQAARPRQASRKKKT 216
Query: 456 DDPEEIAKRLQTLEKKE 506
P+E K+ Q + ++
Sbjct: 217 SKPQEKDKQEQDKQDQD 233
>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 511
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 HCFQNLRKNHYLLYVMPPLTICSLSKISLLNIYTN-HRHLLKSKQRLTV 312
HC +K++ LY + L C + ++ L+N+Y + R ++K+ R T+
Sbjct: 454 HCDHVCKKSNRRLYALRLLKKCGVKELDLVNVYCSVIRSVIKTVPRCTL 502
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 333 YKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDDPEEI--AKRLQTLEKKE 506
Y L +NK D + VN+ ELR + KR + +K+K ++ E + +R + L++KE
Sbjct: 606 YAKHLLQTLRNK--DEMEVNLREELRNERKRMADLAKKQKQEEQERLREEERQRKLQEKE 663
Query: 507 TL 512
L
Sbjct: 664 RL 665
>SB_18108| Best HMM Match : HA (HMM E-Value=0.059)
Length = 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 339 MLALDAKQNKLLDCVWVN-MPTELRPQAKRPRTVPRKRKLDDP 464
+L L + L+D W+ + L ++ PRT+PRKR + P
Sbjct: 17 VLTLTPLKKSLVDLTWIRTLARLLEKRSPDPRTMPRKRNNNFP 59
>SB_16521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 151 QHLCRHHCFQNLRKNHYLLYVMPPLTICSLSKISLLNIYTNHRHLL 288
QHL HCF ++H L ++ C LS +L N RHL+
Sbjct: 109 QHLSTFHCFYTTEQDHEGLILILVRLCCDLSNDAL----CNRRHLV 150
>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
Length = 815
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 321 YSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRKRK-LDDPEEIAK 479
Y D Y ++ +NK+ C ++P + +P K +KRK D +IAK
Sbjct: 755 YLDAYIRNYVECVKNKMPSCGMKDLPAQEKPLVKDSTKTEKKRKDFVDLRKIAK 808
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 394 MLTHTQSNNLFCFASSANILYLSEYRSTPSVSVLTLTN 281
++TH ++ +SS NI+ +Y PS+S L++ N
Sbjct: 428 IITHQYHHHPSISSSSTNIIISHQYHRHPSISSLSIIN 465
>SB_16029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 166 HHCFQNLRKNHYLLYVMPPLTICS 237
HHCF + H++ Y + L +C+
Sbjct: 90 HHCFTVTEEEHHVRYALKCLAVCT 113
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 402 ELRPQAKRPRTVPRKRKLDDPEEIAKR 482
ELR Q + PR PRK +D +I KR
Sbjct: 5824 ELREQLREPRIRPRKGVVDSDFQIYKR 5850
>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 250 SLLNIYTNHRHLLKSKQRLTV*SDILISTKC*HLMRSRISYWIACGLTCLPNYGLKQNVR 429
S+ + N H+L S L DIL+ + I + + G LPN G + +R
Sbjct: 160 SVSELPDNTLHVLASCHSLVCLDDILVGDPLEKAVLQAIDWRLTKGDLVLPNKGRRLTMR 219
Query: 430 VLFRGKENSMIPK 468
++ R +S + +
Sbjct: 220 IMHRHHFSSALKR 232
>SB_37938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 169 HCFQNLRKNHYLLYVMPPLTICSLSKISLLNIYTNHRHLLKS 294
HC ++K++ LY + L C L I L+ +Y R L++S
Sbjct: 80 HCDFIIKKDNKRLYALRVLKKCGLDAIELITVY---RSLIRS 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,090
Number of Sequences: 59808
Number of extensions: 246353
Number of successful extensions: 752
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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