Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004355-1|AAH04355.1|  218|Homo sapiens polymerase (RNA) III (D...    46   8e-05
AK056984-1|BAB71332.1|  218|Homo sapiens protein ( Homo sapiens ...    46   8e-05
U93868-1|AAB63676.1|  233|Homo sapiens RNA polymerase III subuni...    43   6e-04
U81031-4|AAC39523.2|  474|Homo sapiens OS9 protein.                    30   4.3  
U41635-1|AAB06495.1|  667|Homo sapiens OS-9 precurosor protein.        30   4.3  
CR456791-1|CAG33072.1|  612|Homo sapiens OS-9 protein.                 30   4.3  
BC023513-1|AAH23513.2|  612|Homo sapiens amplified in osteosarco...    30   4.3  
BC007254-1|AAH07254.1|  612|Homo sapiens amplified in osteosarco...    30   4.3  
BC006506-1|AAH06506.4|  373|Homo sapiens OS-9 protein protein.         30   4.3  
BC000532-1|AAH00532.1|  612|Homo sapiens amplified in osteosarco...    30   4.3  
AB002806-1|BAA24363.1|  667|Homo sapiens OS-9 protein.                 30   4.3  

>BC004355-1|AAH04355.1|  218|Homo sapiens polymerase (RNA) III (DNA
           directed) polypeptide G (32kD)-like protein.
          Length = 218

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
 Frame = +3

Query: 225 DYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKMLA-LDAKQNKLLDCVWVNMPT 401
           +Y+L +K +    + + P F++       VERYSDKY+M   +D   +   D  W  +P 
Sbjct: 58  EYVLALKQELRGAMRQLPYFIRPAVPKRDVERYSDKYQMSGPIDNAIDWNPD--WRRLPR 115

Query: 402 ELRPQAKRPR------TVPRK--RKLDDPEEIAKRLQTLEKKE 506
           EL+ + ++ +       +P++  +  +D EE  ++L+TLEKKE
Sbjct: 116 ELKIRVRKLQKERITILLPKRPPKTTEDKEETIQKLETLEKKE 158


>AK056984-1|BAB71332.1|  218|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32422 fis, clone SKMUS2000933, weakly similar to
           RNA polymerase III subunit. ).
          Length = 218

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
 Frame = +3

Query: 225 DYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKMLA-LDAKQNKLLDCVWVNMPT 401
           +Y+L +K +    + + P F++       VERYSDKY+M   +D   +   D  W  +P 
Sbjct: 58  EYVLALKQELRGAMRQLPYFIRPAVPKRDVERYSDKYQMSGPIDNAIDWNPD--WRRLPR 115

Query: 402 ELRPQAKRPR------TVPRK--RKLDDPEEIAKRLQTLEKKE 506
           EL+ + ++ +       +P++  +  +D EE  ++L+TLEKKE
Sbjct: 116 ELKIRVRKLQKERITILLPKRPPKTTEDKEETIQKLETLEKKE 158


>U93868-1|AAB63676.1|  233|Homo sapiens RNA polymerase III subunit
           protein.
          Length = 233

 Score = 43.2 bits (97), Expect = 6e-04
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
 Frame = +3

Query: 225 DYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTE 404
           +YML +K +  E +   P F++   E   +ERYS +Y  +    ++  + D  W  +P E
Sbjct: 55  EYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKV---YQEEWIPD--WRRLPRE 109

Query: 405 LRPQAKRPRTVPRKRK---------LDDPEEIAKRLQTLEKK 503
           + P+ K  +  P+ +K         L + E++ K++  LEK+
Sbjct: 110 MMPRNKCKKAGPKPKKAKDAGKGTPLTNTEDVLKKMVELEKR 151


>U81031-4|AAC39523.2|  474|Homo sapiens OS9 protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 283 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 332


>U41635-1|AAB06495.1|  667|Homo sapiens OS-9 precurosor protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


>CR456791-1|CAG33072.1|  612|Homo sapiens OS-9 protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


>BC023513-1|AAH23513.2|  612|Homo sapiens amplified in osteosarcoma
           protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


>BC007254-1|AAH07254.1|  612|Homo sapiens amplified in osteosarcoma
           protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


>BC006506-1|AAH06506.4|  373|Homo sapiens OS-9 protein protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 182 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 231


>BC000532-1|AAH00532.1|  612|Homo sapiens amplified in osteosarcoma
           protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


>AB002806-1|BAA24363.1|  667|Homo sapiens OS-9 protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300 ETDGVERYSDKYK-MLALDAKQNKLLDCVWVNMPTELRPQAKRPRTVPRK 446
           + DG+++ S++ + MLAL +  NKL+  +      EL  + K+ R VP+K
Sbjct: 476 DPDGLKKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKK 525


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,946,214
Number of Sequences: 237096
Number of extensions: 1035071
Number of successful extensions: 2555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)