Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical ...    30   0.87 
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    29   1.5  
U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...    27   8.1  
L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family ...    27   8.1  
AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical
           protein Y54E5A.6 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 387 VNMPTELRPQAKRPRTVPRKRKLDDPEEIAKRLQTLEK 500
           V++ T L+  AK P T  + R LDDPE+  K +Q +EK
Sbjct: 132 VDILTSLKSAAKVPVTC-KIRVLDDPEDTLKLVQEIEK 168


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 219 ATDYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKML-ALDAKQNKL 371
           + DY+L+  DQ I+YL +SP F  +     G   Y D  +ML A+D  +N L
Sbjct: 625 SVDYVLL--DQVIQYLADSPVFGTILVFLPG---YEDIQQMLKAIDCWKNSL 671


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 348 LDAKQNKLLDCVWVN-MPTELRPQAKRPRTVPRKRKLDDPEEIAK 479
           L  K+   L C++ + MP  L PQ  RPR +   R +DD   + K
Sbjct: 162 LKRKRTSSLTCLFSSDMPPILTPQRLRPRGISETRTIDDDVFVPK 206


>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 421 NVRVLFRGKENSMIP 465
           NV ++FRGKEN+++P
Sbjct: 137 NVGIMFRGKENALMP 151


>L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family
           protein 1, isoform c protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 473 YLFGIIEFSFPRNSTRTFCLR 411
           ++F I+   FP+NS+  FC+R
Sbjct: 78  FIFKIVRQKFPKNSSSFFCVR 98


>AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical
           protein T28B4.1a protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410
           D ++R+  ++  L L   Q+KLL+  W+NM  +LR
Sbjct: 383 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 416


>AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical
           protein T28B4.1b protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410
           D ++R+  ++  L L   Q+KLL+  W+NM  +LR
Sbjct: 366 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 399


>AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical
           protein T28B4.1c protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410
           D ++R+  ++  L L   Q+KLL+  W+NM  +LR
Sbjct: 400 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,876
Number of Sequences: 27780
Number of extensions: 183865
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)