BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313H02f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 30 0.87 Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 1.5 AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical ... 29 1.5 U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical pr... 27 8.1 L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family ... 27 8.1 AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 27 8.1 AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 27 8.1 AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 27 8.1 >AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical protein Y54E5A.6 protein. Length = 436 Score = 30.3 bits (65), Expect = 0.87 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = +3 Query: 387 VNMPTELRPQAKRPRTVPRKRKLDDPEEIAKRLQTLEK 500 V++ T L+ AK P T + R LDDPE+ K +Q +EK Sbjct: 132 VDILTSLKSAAKVPVTC-KIRVLDDPEDTLKLVQEIEK 168 >Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein F52B5.3 protein. Length = 1425 Score = 29.5 bits (63), Expect = 1.5 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 219 ATDYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKML-ALDAKQNKL 371 + DY+L+ DQ I+YL +SP F + G Y D +ML A+D +N L Sbjct: 625 SVDYVLL--DQVIQYLADSPVFGTILVFLPG---YEDIQQMLKAIDCWKNSL 671 >AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical protein C41D11.4 protein. Length = 330 Score = 29.5 bits (63), Expect = 1.5 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 348 LDAKQNKLLDCVWVN-MPTELRPQAKRPRTVPRKRKLDDPEEIAK 479 L K+ L C++ + MP L PQ RPR + R +DD + K Sbjct: 162 LKRKRTSSLTCLFSSDMPPILTPQRLRPRGISETRTIDDDVFVPK 206 >U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical protein K10C2.4 protein. Length = 418 Score = 27.1 bits (57), Expect = 8.1 Identities = 9/15 (60%), Positives = 14/15 (93%) Frame = +1 Query: 421 NVRVLFRGKENSMIP 465 NV ++FRGKEN+++P Sbjct: 137 NVGIMFRGKENALMP 151 >L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family protein 1, isoform c protein. Length = 113 Score = 27.1 bits (57), Expect = 8.1 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 473 YLFGIIEFSFPRNSTRTFCLR 411 ++F I+ FP+NS+ FC+R Sbjct: 78 FIFKIVRQKFPKNSSSFFCVR 98 >AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical protein T28B4.1a protein. Length = 535 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410 D ++R+ ++ L L Q+KLL+ W+NM +LR Sbjct: 383 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 416 >AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical protein T28B4.1b protein. Length = 518 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410 D ++R+ ++ L L Q+KLL+ W+NM +LR Sbjct: 366 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 399 >AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical protein T28B4.1c protein. Length = 552 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 306 DGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELR 410 D ++R+ ++ L L Q+KLL+ W+NM +LR Sbjct: 400 DMIKRHGHQFHGLCLGG-QHKLLEYFWMNMIPQLR 433 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,221,876 Number of Sequences: 27780 Number of extensions: 183865 Number of successful extensions: 557 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 557 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -