Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313H02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51770.1 68418.m06419 protein kinase family protein contains ...    31   0.47 
At4g01590.1 68417.m00207 expressed protein                             29   2.5  
At5g54180.1 68418.m06746 mitochondrial transcription termination...    27   7.7  
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ...    27   7.7  

>At5g51770.1 68418.m06419 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = +3

Query: 357 KQNKLLDCVWVNMPTELRPQAKRPRTVPRKRKLDD-PEEIAKRLQTLEKKETLETD 521
           K +K L+  W+++  E     K+ R + R+   D+  +E+AKR++  +KK+TLE++
Sbjct: 384 KSSKRLEW-WLSLDEEKEKGKKKKRRMVREWWKDEYRKELAKRMKKKKKKKTLESE 438


>At4g01590.1 68417.m00207 expressed protein 
          Length = 200

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +3

Query: 288 KVKTETDGVERYSDKYKMLALDAKQNKLLDCVWV---NMPTELRPQAKRPRTVPRKRKLD 458
           K + E+  +ERYSD  K      K     D + +   N P EL    +R +  P KR   
Sbjct: 68  KKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRREQR-PVKRAKW 126

Query: 459 DPEEIAKRLQTLEKKE 506
             E   ++L   EK E
Sbjct: 127 SQEADLQKLDVFEKLE 142


>At5g54180.1 68418.m06746 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 500

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 225 DYMLIVKDQFIEYLHESPAFVKVKTETDGVERYSDKYKMLALDAKQNKLL 374
           +Y++    + +E L   PAF+  K ++    RY +K K    +   NKLL
Sbjct: 432 EYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLL 481


>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 258 EYLHESPAFVKVKTETDGVERYSDKYKMLALDAKQNKLLDCVWVNMPTELRPQAKRP 428
           E  H S   + +K  TDG   Y+D    +  +  Q+ L  C       +LR  AK P
Sbjct: 178 EITHPSHVRLPLKLLTDGAPNYTDPRCHICGEDTQHLLYHCDICKFNLDLRCAAKSP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,420,305
Number of Sequences: 28952
Number of extensions: 161965
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)