Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   3.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   4.3  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 200 KPKTVVQFYISCFSTIKHATIVESM 274
           KPK +     S FS +KH  + ES+
Sbjct: 153 KPKKIRGKISSFFSKLKHKIVGESV 177


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 178 HAVTVGREFDRVCGR-PRSTRESQLDR 101
           HAV VG  +DRV        +E ++D+
Sbjct: 284 HAVGVGNIYDRVLSELVNKMKEMKMDK 310


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  FEIQRGIFLSFVRHGV 75
           F I RG+ LSFV + V
Sbjct: 384 FSITRGLILSFVDYFV 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,958
Number of Sequences: 336
Number of extensions: 1134
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)