Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    32   0.025
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   0.72 
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    25   3.8  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   3.8  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   3.8  
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    25   3.8  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    23   8.8  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    23   8.8  

>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 31.9 bits (69), Expect = 0.025
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 166 QLRRGSSIKVNQT*NSRSILYLLLQHYQTCYNSRKYELCLV 288
           QLR+ +S K N   +SRS L + ++ ++ C  S K+E C +
Sbjct: 250 QLRKSTSTKSNSV-SSRSHLIMSIELFKVCTKSNKFESCQI 289


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 FTTNSYGVGLVSKLIKPKTVVQFYISCFSTIKHA 256
           F+  S+G+ +  K+    ++V F++ CF  + +A
Sbjct: 20  FSAISFGISIYIKVFGRSSIVTFFLLCFHLVPNA 53


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   FYNNKHPVFEIQRGIFLSFVRHGVKRPNGVVEPGLTAIR 120
           F++N    FE+QRG+   F  + +   + V+E  L A R
Sbjct: 54  FFSNVQDQFELQRGLNNCFA-YDIVPSSDVIEQALRAAR 91


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 64  RHGVKRPNGVVEPGLTAIRVLIV-AGRTRD-RIHDQQLRRGS 183
           +H   RP  +++PG+T +  LIV   +T + RI+   +R+GS
Sbjct: 186 KHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGS 227


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 316 YAIENVKKLALSRAHTFDYCSMF 248
           YA+ ++ ++ L    T+DYC +F
Sbjct: 8   YALGSIVRIKLVNFVTYDYCELF 30


>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNVLDSVK 319
           GL+ +++KPK V+  ++S    +  A + E +  A    + VL   +
Sbjct: 183 GLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFR 229


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   FYNNKHPVFEIQRGIFLSFVRHGVK 78
           F + K  V +I+  IFL+ V  GVK
Sbjct: 401 FSDTKKSVSQIEMEIFLALVEKGVK 425


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 102 GFDDPVRPLHTVTDEREKNTTLYL 31
           G D  VRPL    D+ E+   +YL
Sbjct: 115 GLDGGVRPLPAAVDQDEEQYLVYL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,707
Number of Sequences: 5004
Number of extensions: 19636
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)