BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G12f (327 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 32 0.025 SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 0.72 SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 25 3.8 SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 25 3.8 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 3.8 SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch... 25 3.8 SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 23 8.8 SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 23 8.8 >SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 633 Score = 31.9 bits (69), Expect = 0.025 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +1 Query: 166 QLRRGSSIKVNQT*NSRSILYLLLQHYQTCYNSRKYELCLV 288 QLR+ +S K N +SRS L + ++ ++ C S K+E C + Sbjct: 250 QLRKSTSTKSNSV-SSRSHLIMSIELFKVCTKSNKFESCQI 289 >SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 226 Score = 27.1 bits (57), Expect = 0.72 Identities = 9/34 (26%), Positives = 20/34 (58%) Frame = +2 Query: 155 FTTNSYGVGLVSKLIKPKTVVQFYISCFSTIKHA 256 F+ S+G+ + K+ ++V F++ CF + +A Sbjct: 20 FSAISFGISIYIKVFGRSSIVTFFLLCFHLVPNA 53 >SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharomyces pombe|chr 1|||Manual Length = 140 Score = 24.6 bits (51), Expect = 3.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 4 FYNNKHPVFEIQRGIFLSFVRHGVKRPNGVVEPGLTAIR 120 F++N FE+QRG+ F + + + V+E L A R Sbjct: 54 FFSNVQDQFELQRGLNNCFA-YDIVPSSDVIEQALRAAR 91 >SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe|chr 1|||Manual Length = 560 Score = 24.6 bits (51), Expect = 3.8 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = +1 Query: 64 RHGVKRPNGVVEPGLTAIRVLIV-AGRTRD-RIHDQQLRRGS 183 +H RP +++PG+T + LIV +T + RI+ +R+GS Sbjct: 186 KHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGS 227 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 24.6 bits (51), Expect = 3.8 Identities = 8/23 (34%), Positives = 15/23 (65%) Frame = -3 Query: 316 YAIENVKKLALSRAHTFDYCSMF 248 YA+ ++ ++ L T+DYC +F Sbjct: 8 YALGSIVRIKLVNFVTYDYCELF 30 >SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 24.6 bits (51), Expect = 3.8 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +2 Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNVLDSVK 319 GL+ +++KPK V+ ++S + A + E + A + VL + Sbjct: 183 GLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFR 229 >SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 481 Score = 23.4 bits (48), Expect = 8.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 4 FYNNKHPVFEIQRGIFLSFVRHGVK 78 F + K V +I+ IFL+ V GVK Sbjct: 401 FSDTKKSVSQIEMEIFLALVEKGVK 425 >SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 23.4 bits (48), Expect = 8.8 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -1 Query: 102 GFDDPVRPLHTVTDEREKNTTLYL 31 G D VRPL D+ E+ +YL Sbjct: 115 GLDGGVRPLPAAVDQDEEQYLVYL 138 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,179,707 Number of Sequences: 5004 Number of extensions: 19636 Number of successful extensions: 52 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 52 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 89857768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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