Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313G12f
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 30 0.37
03_02_0680 + 10351625-10351824,10352224-10352266,10352477-103525... 29 0.65
06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836... 29 1.1
05_02_0103 - 6628740-6628748,6629150-6629374 27 3.5
01_06_0813 - 32165310-32165546,32165691-32165783,32166075-321662... 27 3.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 26 6.1
02_05_1118 + 34241819-34242217,34242350-34242522,34243499-342436... 26 6.1
01_05_0805 - 25381367-25381398,25382373-25382892 26 6.1
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 26 8.0
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 85 NGVVEPGLTAIRVLIVAGRTRDRIHDQQLRRGSS 186
+GVV+P + VL+V TR RI ++RRG++
Sbjct: 603 SGVVKPSIHCFYVLVVLFDTRRRIQMMKMRRGTT 636
>03_02_0680 +
10351625-10351824,10352224-10352266,10352477-10352530,
10353122-10353185,10353385-10353441,10353516-10353610,
10353836-10353924,10354022-10354100,10355193-10355240,
10356675-10356767
Length = 273
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMS 277
G+V K+ K + YI C ST+ HAT + S
Sbjct: 147 GVVVKMFSSKCSISVYIYCDSTVAHATTLRHPS 179
>06_03_0561 -
22183140-22183185,22183273-22183442,22183554-22183619,
22183911-22184010,22184072-22184164,22184259-22184352,
22185029-22185257,22185460-22185556,22187406-22187710
Length = 399
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 AAERGRRTRS-NCDSRVDRGRPHTRSNSRPT 167
A ERG+R S C + VDR RP T S P+
Sbjct: 129 AIERGKRIASVQCSALVDRWRPETHSFHLPS 159
>05_02_0103 - 6628740-6628748,6629150-6629374
Length = 77
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 82 PNGVVEPGLTA-IRVLIVAGRTR 147
PNG+VE G+ A +R+ V RTR
Sbjct: 2 PNGIVETGIRARLRIAAVVARTR 24
>01_06_0813 -
32165310-32165546,32165691-32165783,32166075-32166218,
32166685-32166771,32166858-32167077,32167879-32168039
Length = 313
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 130 VAGRTRDRIHDQQLRRGSSIKVNQT*NSRSILYLLLQHYQTCYNSRKYE 276
V + RI ++ +I+ + SI++ LL+ Q CYN+ Y+
Sbjct: 52 VTKEEKQRIDQSEILTLDNIRTSLVRQEDSIIFSLLERAQFCYNADIYD 100
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 KRPNG-VVEPGLTAIRVLIVAGRTRDRIHDQQLRRGSS 186
K PN V+EP + + +I AG+ + D+ RRG S
Sbjct: 597 KLPNEPVLEPSQSELTEIITAGKLGESTRDRTHRRGDS 634
>02_05_1118 +
34241819-34242217,34242350-34242522,34243499-34243660,
34243762-34243903,34244320-34244544,34244649-34244711,
34244817-34244891,34245198-34245404,34247274-34247465,
34247515-34247634
Length = 585
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 130 RSTRESQLDRVRRPRSAASHRDGRTREKYHAVSQI 26
R RE Q V+ S R+GR REKY S I
Sbjct: 514 REEREEQPPLVQGATSTQVSRNGREREKYIGSSMI 548
>01_05_0805 - 25381367-25381398,25382373-25382892
Length = 183
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 145 VCGRPRSTRESQLDRVRRPRSAASHRDGRTR 53
VCG PR + + R R S A+HR R R
Sbjct: 2 VCGGPRELKNGGIARDWRGGSTAAHRRTRRR 32
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 146 AIEFTTNSYGVGLVSKLIKPKTVVQFYISC 235
A +Y +GL S L +PK +V++ SC
Sbjct: 534 AARVAAKAYDLGLASHLPRPKDLVKYAESC 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,396,355
Number of Sequences: 37544
Number of extensions: 126517
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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