Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.072
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                29   0.89 
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               28   2.1  
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   28   2.1  
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)            27   3.6  
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)                    27   3.6  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    27   4.8  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               26   6.3  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 155 FTTNSYGVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFF--NVLDSVKXN 325
           +T N Y + L SKL K KT + FYI+      H T++ S  S    +   N+L+SV+ N
Sbjct: 247 YTNNDYSICLDSKLNKRKT-IGFYINNLLQHSHITLIPSSYSDQRYYIEKNLLNSVRHN 304


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 178 HAVTVGREFDRVCGRPRSTRESQLDRVRRPRSAASHRDGRTR 53
           HAV        + GR +   +S LDRVR PR   SH+  R R
Sbjct: 461 HAVKPAFHGGSLRGRYQRDMDSVLDRVRAPRVLDSHKRDRYR 502


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 31   EIQRGIFLSFVRHGVKRPNGVVEPGLTAIRVLIVAG-------RTRDRIHDQQLRRGSSI 189
            E Q    LSF +     P G+V  G+    VL++A        R R RI D  L +G+  
Sbjct: 1042 ETQGSTLLSFFKEFRLFPQGIVAIGIVLFLVLVIAAIVLVCKWRKRRRIRDMDLTQGTEH 1101

Query: 190  KVNQT 204
            +  +T
Sbjct: 1102 ETIRT 1106


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 60  RPSRCEAAERGRRTRSNCDSRVDRGRPHTRSNSR 161
           + ++C    +G+ T  +CD   +RG+   R N+R
Sbjct: 366 KTAKCALTCKGKGTYGSCDQTCERGKCQLRCNTR 399


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 160 REFDRVC-GRPRSTRESQLDRVRRPRSAASHRDGRTREK 47
           RE DR   GRPR +R+++  R  RPR   + RD R +E+
Sbjct: 291 READRSRDGRPRESRDAERPRDCRPRE--TDRDPRDKER 327


>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
          Length = 432

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 151 DRVCGRPRSTRESQLDRVR-RPRSAASHRDGRTREK 47
           DRV  R R  +E   DR + RPR   S +D RTR+K
Sbjct: 73  DRVKDRERGDKERTKDRDKERPRERDSEQD-RTRDK 107


>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
          Length = 238

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 163 GREFDRVCGRPRSTRESQLDRVRRPRSAASH-----RDGRTREKYHAV 35
           GR+F  + G PR   ++Q+ R  R  +   H      D + +EK+H +
Sbjct: 23  GRDFYAILGVPRDASKNQIKRAYRKLAMKLHPDKNKDDPKAQEKFHDI 70


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 57   VRPSRCEAAERGRRTRSNCDSRVDRGRPHTR 149
            V  ++C+A  RG R ++ CD+R    R   R
Sbjct: 1263 VHNTKCDARYRGHRDKTKCDARYRGHRDKVR 1293


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 136 RPRSTRESQLDRVRRPRSAASHR 68
           RPR +R   LDR RR RS +  R
Sbjct: 177 RPRKSRSKSLDRSRRSRSRSYSR 199


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 172 VTVGREFDRVCGRPRSTRESQLDRVRRPRSAASHRDGRTREKYHA 38
           VT+ R+ DR   R R T   Q+DR RR R+  + R    R +  A
Sbjct: 105 VTIRRQVDRRRTRARVTSRRQVDR-RRTRAQVTRRRQVDRRRTRA 148


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 136  RPRSTRESQLDRVRRPRSAASHRDGRTR 53
            RPR   E + +R  RPRS    RD R R
Sbjct: 1817 RPRRDDERREERPPRPRSGMDRRDERPR 1844


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 178 HAVTVGREFDRVCGRPRSTRESQLDRVRRPRSAASHR 68
           H  T  R  D +  RPRS       R  RP S   HR
Sbjct: 66  HRPTAPRPHDPIAPRPRSPHGPVAPRPHRPISPRPHR 102


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 48  FSLVRPSRCEAAERGRRTRSNCDSRV 125
           FSL    R E  E+GRR R+  + R+
Sbjct: 690 FSLTESERLELEEQGRRERARKEKRI 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,996,763
Number of Sequences: 59808
Number of extensions: 159394
Number of successful extensions: 651
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)