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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein (spl...    27   4.2  
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    26   5.6  
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    26   5.6  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    26   5.6  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    26   5.6  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    26   5.6  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    26   5.6  
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    26   5.6  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    26   5.6  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    26   7.4  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform a protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 66  SRCEAAERGR---RTRSNCDSRVDRGRPHTRSNSR 161
           SR  + ER R   RTRS   S  +R R H++S SR
Sbjct: 132 SRDRSRERSRERERTRSRSRSPQERDRSHSKSRSR 166


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295
           G +++ I    +VQF ISC + + H   +   ++A C+F
Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resistance
            related protein1 protein.
          Length = 1540

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1037 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1080


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295
           G +++ I    +VQF ISC + + H   +   ++A C+F
Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
            resistance-associatedprotein protein.
          Length = 1534

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 173  GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
            G+G  + +     ++   + C S + HAT++E++  +   FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 166 VGREFDRVCGRPRS-TRESQLDRVRRPRSAASHRDGRTREK 47
           +GR   +   R RS ++E +  R R PR +  HR+ R R++
Sbjct: 1   MGRGEHKEHKRKRSRSKERKRSRSRSPRGSREHREHRDRDR 41


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 54  LVRPSRCEAAERGRRTRSNCDSRVDRGRPHTRSNSR 161
           +V   +CE   R R T +N   RVD G P   + SR
Sbjct: 87  IVSRGQCEVVCRSRLTGANFLWRVDDGTPCQAATSR 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,518,959
Number of Sequences: 27780
Number of extensions: 111798
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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