Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313G12f
(327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 4.2
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 26 5.6
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 26 5.6
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 26 5.6
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 26 5.6
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 26 5.6
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 26 7.4
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 25 9.7
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 66 SRCEAAERGR---RTRSNCDSRVDRGRPHTRSNSR 161
SR + ER R RTRS S +R R H++S SR
Sbjct: 132 SRDRSRERSRERERTRSRSRSPQERDRSHSKSRSR 166
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295
G +++ I +VQF ISC + + H + ++A C+F
Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resistance
related protein1 protein.
Length = 1540
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1037 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1080
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform e protein.
Length = 1534
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform c protein.
Length = 1534
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform b protein.
Length = 1534
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform a protein.
Length = 1528
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295
G +++ I +VQF ISC + + H + ++A C+F
Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304
G+G + + ++ + C S + HAT++E++ + FF+V
Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 166 VGREFDRVCGRPRS-TRESQLDRVRRPRSAASHRDGRTREK 47
+GR + R RS ++E + R R PR + HR+ R R++
Sbjct: 1 MGRGEHKEHKRKRSRSKERKRSRSRSPRGSREHREHRDRDR 41
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 54 LVRPSRCEAAERGRRTRSNCDSRVDRGRPHTRSNSR 161
+V +CE R R T +N RVD G P + SR
Sbjct: 87 IVSRGQCEVVCRSRLTGANFLWRVDDGTPCQAATSR 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,518,959
Number of Sequences: 27780
Number of extensions: 111798
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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