BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G12f (327 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 4.2 Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 26 5.6 U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 26 5.6 U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6 U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6 U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 26 5.6 U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 26 5.6 AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 26 5.6 AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 26 5.6 AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 26 7.4 Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 25 9.7 >U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (splicing factor) protein6, isoform a protein. Length = 179 Score = 26.6 bits (56), Expect = 4.2 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +3 Query: 66 SRCEAAERGR---RTRSNCDSRVDRGRPHTRSNSR 161 SR + ER R RTRS S +R R H++S SR Sbjct: 132 SRDRSRERSRERERTRSRSRSPQERDRSHSKSRSR 166 >Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical protein F56H11.4 protein. Length = 288 Score = 26.2 bits (55), Expect = 5.6 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +2 Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295 G +++ I +VQF ISC + + H + ++A C+F Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243 >U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resistance related protein1 protein. Length = 1540 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1037 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1080 >U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform e protein. Length = 1534 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068 >U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform c protein. Length = 1534 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068 >U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform b protein. Length = 1534 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068 >U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform a protein. Length = 1528 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068 >AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain polyunsaturated fattyacid elongation enzyme protein. Length = 288 Score = 26.2 bits (55), Expect = 5.6 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +2 Query: 179 GLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEF 295 G +++ I +VQF ISC + + H + ++A C+F Sbjct: 206 GFIAQAITSLQIVQFIISC-AVLAHLGYLMHFTNANCDF 243 >AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug resistance-associatedprotein protein. Length = 1534 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +2 Query: 173 GVGLVSKLIKPKTVVQFYISCFSTIKHATIVESMSSA*CEFFNV 304 G+G + + ++ + C S + HAT++E++ + FF+V Sbjct: 1025 GMGQATSVCAASIIMALGMVCASRLLHATLLENIMRSPMAFFDV 1068 >AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical protein F53H1.1 protein. Length = 970 Score = 25.8 bits (54), Expect = 7.4 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 166 VGREFDRVCGRPRS-TRESQLDRVRRPRSAASHRDGRTREK 47 +GR + R RS ++E + R R PR + HR+ R R++ Sbjct: 1 MGRGEHKEHKRKRSRSKERKRSRSRSPRGSREHREHRDRDR 41 >Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein F53B6.2a protein. Length = 1045 Score = 25.4 bits (53), Expect = 9.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 54 LVRPSRCEAAERGRRTRSNCDSRVDRGRPHTRSNSR 161 +V +CE R R T +N RVD G P + SR Sbjct: 87 IVSRGQCEVVCRSRLTGANFLWRVDDGTPCQAATSR 122 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,518,959 Number of Sequences: 27780 Number of extensions: 111798 Number of successful extensions: 259 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 259 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 398409266 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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