Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.8  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  LVRPSRCEAAERGRRT 101
           L+ PS+CEA    R++
Sbjct: 24  LIIPSKCEAVSNDRQS 39


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 99  FDDPVRPLHTVTDEREKNTTLYLKYRVFII 10
           F DP+ P+H         T  YL  R  I+
Sbjct: 155 FKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 99  FDDPVRPLHTVTDEREKNTTLYLKYRVFII 10
           F DP+ P+H         T  YL  R  I+
Sbjct: 155 FKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 99  FDDPVRPLHTVTDEREKNTTLYLKYRVFII 10
           F DP+ P+H         T  YL  R  I+
Sbjct: 206 FKDPLIPVHFALRIYRNGTVNYLMRRHLIL 235


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 99  FDDPVRPLHTVTDEREKNTTLYLKYRVFII 10
           F DP+ P+H         T  YL  R  I+
Sbjct: 155 FKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 179 PRRNCWS*IRSRVRPATI 126
           P RN     RS VRPAT+
Sbjct: 327 PMRNDSERNRSPVRPATV 344


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 194 TLILDPRRNC 165
           TLIL PR+ C
Sbjct: 461 TLILPPRKRC 470


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = +1

Query: 148 DRIHDQQLRRGSSIKVNQT*NSRSILYLLLQHYQTCYNSRKYELCL 285
           ++++  ++   +S +VN       I+  L      C N  K  +CL
Sbjct: 73  EKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,906
Number of Sequences: 438
Number of extensions: 1385
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)