Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G12f
         (327 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin...    27   2.2  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    27   3.9  
At5g55820.1 68418.m06956 expressed protein                             25   9.0  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    25   9.0  
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    25   9.0  
At1g47330.1 68414.m05240 expressed protein contains Pfam profile...    25   9.0  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    25   9.0  

>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 67  HGVKRPNGVVEPGLT-AIRVLIVAGRTRDRIHDQQLR 174
           HG KR  G+V  G+  A  +L  +  +RDRIHD   R
Sbjct: 301 HG-KRVEGIVHGGVGHAFHILDNSSVSRDRIHDMMCR 336


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
           myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
           thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 151 DRVCGRPRSTRESQLDRVRRPRSAASHRDGRTREKY 44
           D +C R   T E  + R   P+SA + RDG  +  Y
Sbjct: 378 DALCKRVMITPEEVIKRSLDPQSAVTSRDGLAKTVY 413


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 50  KIPRCISNTGC 18
           K+P+C+S TGC
Sbjct: 241 KVPKCVSTTGC 251


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 66  SRCEAAERGR-RTRSNCDSRVDRGRPHTRSNS 158
           SR  +  R R R+RS   SR  RGR H+RS S
Sbjct: 203 SRSRSPSRSRSRSRSRSRSR-GRGRSHSRSRS 233


>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 163 GREFDRVCGRPRSTRESQLDRVRRPRSAASHRDGRTREK 47
           GRE +R    P+ TRE +  R++R +     R  R RE+
Sbjct: 379 GRERERE--EPQETREEREKRIQREKIREERRRERERER 415


>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 527

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 88  GVVEPGLTAIRVLIVAGRTRDRIH 159
           G++  GL  + VLI +GR +DRI+
Sbjct: 35  GLMSLGLVDLEVLIKSGRPQDRIN 58


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 163 GREFDRV-CGRPRSTRESQLDRVRRPRSAASHRDGRTREKYH 41
           G E DRV     +S RE    R  R  S  SH +  T  ++H
Sbjct: 620 GHEHDRVHTVSDKSHRERSKHRHERSSSRYSHEEDSTESRHH 661


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,967,004
Number of Sequences: 28952
Number of extensions: 100527
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)