BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G08f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 100 2e-22 SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 69 4e-13 SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.2 SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 26 3.0 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 3.0 SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 3.0 SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 3.9 SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 5.2 >SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 100 bits (239), Expect = 2e-22 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 15/165 (9%) Frame = +2 Query: 47 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 220 +++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80 Query: 221 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 370 E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139 Query: 371 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTL 496 VH+T++T ++ + ++ YV P+G+ C F P T+ Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTI 183 >SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizosaccharomyces pombe|chr 3|||Manual Length = 324 Score = 68.9 bits (161), Expect = 4e-13 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Frame = +2 Query: 53 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 223 V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76 Query: 224 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 400 + N+ + E+ +++N++E +VGW+ TG ++ I+ + PV V +D Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136 Query: 401 GGRMGLRAYVCV 436 + AY + Sbjct: 137 SVGLPTNAYFAI 148 >SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1334 Score = 26.6 bits (56), Expect = 2.2 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 95 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 220 Y+ R DSHR I L GT + + + + +K H ++E Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524 >SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 131 Score = 26.2 bits (55), Expect = 3.0 Identities = 6/11 (54%), Positives = 10/11 (90%) Frame = +1 Query: 469 HVHSCRCHSHV 501 H+H CRCH+++ Sbjct: 69 HIHCCRCHTYI 79 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 26.2 bits (55), Expect = 3.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 43 QY*CKGPSCCFISNCGRIRTSKCRF 117 Q+ K P C IS R SKCR+ Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979 >SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 26.2 bits (55), Expect = 3.0 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +2 Query: 41 LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 205 LNI ++ +V+ ++++ ++RN D H I + TSD ++ + N F + H Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312 Query: 206 AD 211 D Sbjct: 313 RD 314 >SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc25|Schizosaccharomyces pombe|chr 1|||Manual Length = 596 Score = 25.8 bits (54), Expect = 3.9 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +1 Query: 106 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 249 + R S SY I ++ SGG + + L A RTC S + T L + CL Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247 >SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 25.4 bits (53), Expect = 5.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 276 LKVLLVGGRLAMK*PTTPLLYTSITPV 356 LKV V +++ PTTP +Y S TPV Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,322,864 Number of Sequences: 5004 Number of extensions: 48952 Number of successful extensions: 141 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -