BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G08f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 125 2e-29 At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 88 3e-18 At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 87 7e-18 At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 2e-06 At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 38 0.005 At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 36 0.022 At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.82 At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.82 At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 1.9 At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 4.4 At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 4.4 At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 4.4 >At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to SP|O04202 Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 293 Score = 125 bits (301), Expect = 2e-29 Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Frame = +2 Query: 47 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 223 ++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85 Query: 224 ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAG 403 +++Y ++ + +VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+DT Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTN 145 Query: 404 GRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEXEIV 520 G ++A+V L + + + F + V L + E V Sbjct: 146 GEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERV 184 >At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory subunit 7, putative / 26S proteasome regulatory subunit S12, putative / MOV34 protein, putative contains similarity to 26s proteasome regulatory subunit s12 (proteasome subunit p40) (mov34 protein) SP:P26516 from [Mus musculus]; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 308 Score = 88.2 bits (209), Expect = 3e-18 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Frame = +2 Query: 53 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 223 V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76 Query: 224 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 400 + NY ++ + +R+N+ E +VGW++TG ++ + +H ++ PV V +D Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPK 136 Query: 401 GGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEXE 514 + +AY V N Q +F V + +E E Sbjct: 137 ELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVE 176 >At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory subunit 7, putative / 26S proteasome regulatory subunit S12, putative / MOV34 protein, putative contains similarity to 26S proteasome regulatory subunit S12 (MOV34) SP:P26516 from [Mus musculus] Length = 310 Score = 87.0 bits (206), Expect = 7e-18 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Frame = +2 Query: 53 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 223 V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76 Query: 224 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 400 + NY ++ + +R+N+ E IVGW++TG ++ + +H ++ PV V +D Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPK 136 Query: 401 GGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEXE 514 + +AY V N Q +F V + +E E Sbjct: 137 ELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVE 176 >At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to SP|Q9C5Z2 Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) {Arabidopsis thaliana}; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 337 Score = 48.8 bits (111), Expect = 2e-06 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +2 Query: 125 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 298 V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+ Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105 >At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6 (CSN6B) identical to COP9 signalosome subunit 6 [Arabidopsis thaliana] GI:17940314, CSN complex subunit 6B [Arabidopsis thaliana] GI:18056667; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA gi|17940313|gb|AF434762.1|AF434762; identical to cDNA CSN complex subunit 6B (CSN6B) GI:18056666 Length = 317 Score = 37.5 bits (83), Expect = 0.005 Identities = 23/92 (25%), Positives = 44/92 (47%) Frame = +2 Query: 122 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 301 RV G ++G VE+ N F + D ++ ++ EL ++V ++GW++ Sbjct: 57 RVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDR--SFLEKKQELYKKVFPDFYVLGWYS 114 Query: 302 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 397 TG++ T IH+ PV+V L+ ++ Sbjct: 115 TGSDATESDMHIHKALMDINESPVYVLLNPAI 146 >At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6 (CSN6A) identical to CSN complex subunit 6A [Arabidopsis thaliana] GI:18056665, COP9 complex subunit 6 [Arabidopsis thaliana] GI:15809663; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family; identical to cDNA CSN complex subunit 6A (CSN6A) GI:18056664 Length = 317 Score = 35.5 bits (78), Expect = 0.022 Identities = 22/92 (23%), Positives = 43/92 (46%) Frame = +2 Query: 122 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 301 RV G ++G VE+ N F + + ++ ++ EL ++V I+GW++ Sbjct: 57 RVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDR--SFLEKKQELYKKVFPDFYILGWYS 114 Query: 302 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 397 TG++ IH+ PV+V L+ ++ Sbjct: 115 TGSDAEESDMHIHKALMDINESPVYVLLNPAI 146 >At5g01240.2 68418.m00032 amino acid permease, putative strong similarity to AUX1 GI:1531758 from [Arabidopsis thaliana]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein Length = 408 Score = 30.3 bits (65), Expect = 0.82 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 268 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 164 D++V L+ IH+ I F F ++FVW +A+G H Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271 >At5g01240.1 68418.m00031 amino acid permease, putative strong similarity to AUX1 GI:1531758 from [Arabidopsis thaliana]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein Length = 488 Score = 30.3 bits (65), Expect = 0.82 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 268 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 164 D++V L+ IH+ I F F ++FVW +A+G H Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351 >At5g48460.1 68418.m05992 fimbrin-like protein, putative strong similarity to fimbrin-like protein AtFim2 [Arabidopsis thaliana] GI:2737926; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 654 Score = 29.1 bits (62), Expect = 1.9 Identities = 10/35 (28%), Positives = 23/35 (65%) Frame = -2 Query: 328 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 224 G+V + ++S+PP F+ +++ Q+V + + +KF Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470 >At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies) Length = 254 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 336 YTSITPVNAVSLSMLL 383 YT++ PVNAVSLS LL Sbjct: 231 YTTVVPVNAVSLSPLL 246 >At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies) Length = 328 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 336 YTSITPVNAVSLSMLL 383 YT++ PVNAVSLS LL Sbjct: 231 YTTVVPVNAVSLSPLL 246 >At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies) Length = 328 Score = 27.9 bits (59), Expect = 4.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 336 YTSITPVNAVSLSMLL 383 YT++ PVNAVSLS LL Sbjct: 231 YTTVVPVNAVSLSPLL 246 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,224,610 Number of Sequences: 28952 Number of extensions: 263221 Number of successful extensions: 714 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 708 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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