Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G05f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0B0X9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  
UniRef50_Q6CMN1 Cluster: Similar to sp|P49687 Saccharomyces cere...    32   9.2  

>UniRef50_Q0B0X9 Cluster: Putative uncharacterized protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Putative uncharacterized protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 283

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 42  NVSHEKLHNLHKWRYLTVCAYYKRTIRGVCICF 140
           N+S+ ++H L  + YLTV    ++  RG+C  F
Sbjct: 12  NISNRQVHELMDYGYLTVAQVERKDNRGICFLF 44


>UniRef50_Q6CMN1 Cluster: Similar to sp|P49687 Saccharomyces
            cerevisiae YGL092w NUP145 nuclear pore protein; n=1;
            Kluyveromyces lactis|Rep: Similar to sp|P49687
            Saccharomyces cerevisiae YGL092w NUP145 nuclear pore
            protein - Kluyveromyces lactis (Yeast) (Candida
            sphaerica)
          Length = 1319

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 430  LSNEIKAGDFKQVQAFEITVVGP 362
            +SN +KAGDFK+ +   IT VGP
Sbjct: 1171 VSNLLKAGDFKEAELVTITTVGP 1193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,315,664
Number of Sequences: 1657284
Number of extensions: 8774004
Number of successful extensions: 17385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17385
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)