Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   3.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   3.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.0  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 345 KRIVLNGPTTVISKAWTCLKSPALISLLKAVKSFFKVHQMPSDG 476
           +RIVL  P+TV + +   L  P    +   ++ F++   + SDG
Sbjct: 90  ERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSYVDSDG 133


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 176 LLRELCH*SKQ*ETNAHTSNSSFII 102
           +L E+CH +   +T+A TSN+S +I
Sbjct: 369 VLNEVCHETMLADTDAETSNNSIMI 393


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 15  YIYIDVKFSNVSHEKLHNLHKWRYLTVCAYYKRTIRGV 128
           Y Y +++FS+ S  +LH+L + +Y+++    K + + V
Sbjct: 275 YTYANLRFSDCSILQLHSLVEKKYVSLSCLSKPSEKSV 312


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 42  NVSHEKLHNLHKWRYLTVCAYYKRTI 119
           NV  ++L+ +  W+Y TVC  +   +
Sbjct: 790 NVDTKQLNCIKSWKYKTVCLVFAEAV 815


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 339 ILKRIVLNGPTTVISKAWTCLKS 407
           +L  I+ +  T V+SKA++CL++
Sbjct: 547 LLSNILQSSDTIVVSKAYSCLET 569


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 48  SHEKLHNLHKWRYLTVCAYYKRTIRGV 128
           SHEK++ LH+W  L+V A     + G+
Sbjct: 142 SHEKMNYLHRW--LSVYAVLISVLHGI 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,515
Number of Sequences: 5004
Number of extensions: 39188
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)