BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G05f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.0 SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 3.0 SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 6.8 SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 6.8 SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.0 SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 9.0 >SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe|chr 2|||Manual Length = 882 Score = 26.2 bits (55), Expect = 3.0 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +3 Query: 345 KRIVLNGPTTVISKAWTCLKSPALISLLKAVKSFFKVHQMPSDG 476 +RIVL P+TV + + L P + ++ F++ + SDG Sbjct: 90 ERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSYVDSDG 133 >SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF|Schizosaccharomyces pombe|chr 3|||Manual Length = 892 Score = 26.2 bits (55), Expect = 3.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -1 Query: 176 LLRELCH*SKQ*ETNAHTSNSSFII 102 +L E+CH + +T+A TSN+S +I Sbjct: 369 VLNEVCHETMLADTDAETSNNSIMI 393 >SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|Schizosaccharomyces pombe|chr 1|||Manual Length = 512 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = +3 Query: 15 YIYIDVKFSNVSHEKLHNLHKWRYLTVCAYYKRTIRGV 128 Y Y +++FS+ S +LH+L + +Y+++ K + + V Sbjct: 275 YTYANLRFSDCSILQLHSLVEKKYVSLSCLSKPSEKSV 312 >SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 984 Score = 25.0 bits (52), Expect = 6.8 Identities = 8/26 (30%), Positives = 15/26 (57%) Frame = +3 Query: 42 NVSHEKLHNLHKWRYLTVCAYYKRTI 119 NV ++L+ + W+Y TVC + + Sbjct: 790 NVDTKQLNCIKSWKYKTVCLVFAEAV 815 >SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1647 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = +3 Query: 339 ILKRIVLNGPTTVISKAWTCLKS 407 +L I+ + T V+SKA++CL++ Sbjct: 547 LLSNILQSSDTIVVSKAYSCLET 569 >SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 564 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 48 SHEKLHNLHKWRYLTVCAYYKRTIRGV 128 SHEK++ LH+W L+V A + G+ Sbjct: 142 SHEKMNYLHRW--LSVYAVLISVLHGI 166 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,079,515 Number of Sequences: 5004 Number of extensions: 39188 Number of successful extensions: 82 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 82 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -