Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger) fa...    33   0.12 
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa...    27   5.8  
At5g05280.1 68418.m00567 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 185

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 312 VLPVCGHAFRIEESDSGLISAENRTSC 232
           VLP+CGH+F +E  D  L+S  +  SC
Sbjct: 117 VLPLCGHSFHVECIDKWLVSRSSCPSC 143


>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 200

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 312 VLPVCGHAFRIEESDSGLISAENRTSC 232
           +LP+C HAF +   D  L S  +  SC
Sbjct: 128 ILPLCSHAFHVACIDKWLTSRSSCPSC 154


>At5g05280.1 68418.m00567 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 176

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 312 VLPVCGHAFRIEESDSGLISAENRTSCLKA*GNHVT 205
           VLP C H F ++  D+ L+S  +  +C ++   H T
Sbjct: 128 VLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,609,732
Number of Sequences: 28952
Number of extensions: 196204
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)