BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G04f (521 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q66X01 Cluster: NACHT, LRR and PYD domains-containing p... 32 6.9 UniRef50_Q2QPE4 Cluster: Retrotransposon protein, putative, uncl... 32 9.2 UniRef50_Q22Y50 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2 >UniRef50_Q66X01 Cluster: NACHT, LRR and PYD domains-containing protein 9C; n=19; Murinae|Rep: NACHT, LRR and PYD domains-containing protein 9C - Mus musculus (Mouse) Length = 1004 Score = 32.3 bits (70), Expect = 6.9 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -2 Query: 421 IFXYCF-LFKIIMGAKI*KMLKRSDYVFFVCSSP 323 I+ YC FKI +G ++ K LK+++ +F +CS+P Sbjct: 300 IYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNP 333 >UniRef50_Q2QPE4 Cluster: Retrotransposon protein, putative, unclassified; n=1; Oryza sativa (japonica cultivar-group)|Rep: Retrotransposon protein, putative, unclassified - Oryza sativa subsp. japonica (Rice) Length = 407 Score = 31.9 bits (69), Expect = 9.2 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Frame = +3 Query: 192 LH-GLLSRDRCGISFGVSTILLKQRSGNFFNYYPKIFLCNLIL 317 LH G+L DR I++GV ++L K + N N+Y I L N+IL Sbjct: 188 LHKGVLDSDR--INYGVISLLPKIKDANIINHYRPICLQNVIL 228 >UniRef50_Q22Y50 Cluster: Putative uncharacterized protein; n=1; Tetrahymena thermophila SB210|Rep: Putative uncharacterized protein - Tetrahymena thermophila SB210 Length = 1699 Score = 31.9 bits (69), Expect = 9.2 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +1 Query: 205 YLGIVVGFLLASPQYF*SSGRGTFLIITPKYFCVT*YYPMAKNKQKKRNRFF 360 Y+GI+V F+ P Y SS R T + P F + + KNK KK FF Sbjct: 652 YVGIIVPFVTCLPLYILSSQRQTTTRM-PCCFLLLWFLLEVKNKSKKLQNFF 702 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 452,633,572 Number of Sequences: 1657284 Number of extensions: 8545094 Number of successful extensions: 16022 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 15746 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 16022 length of database: 575,637,011 effective HSP length: 95 effective length of database: 418,195,031 effective search space used: 32619212418 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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