Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G04f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q66X01 Cluster: NACHT, LRR and PYD domains-containing p...    32   6.9  
UniRef50_Q2QPE4 Cluster: Retrotransposon protein, putative, uncl...    32   9.2  
UniRef50_Q22Y50 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q66X01 Cluster: NACHT, LRR and PYD domains-containing
           protein 9C; n=19; Murinae|Rep: NACHT, LRR and PYD
           domains-containing protein 9C - Mus musculus (Mouse)
          Length = 1004

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 421 IFXYCF-LFKIIMGAKI*KMLKRSDYVFFVCSSP 323
           I+ YC   FKI +G ++ K LK+++ +F +CS+P
Sbjct: 300 IYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNP 333


>UniRef50_Q2QPE4 Cluster: Retrotransposon protein, putative,
           unclassified; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           unclassified - Oryza sativa subsp. japonica (Rice)
          Length = 407

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 192 LH-GLLSRDRCGISFGVSTILLKQRSGNFFNYYPKIFLCNLIL 317
           LH G+L  DR  I++GV ++L K +  N  N+Y  I L N+IL
Sbjct: 188 LHKGVLDSDR--INYGVISLLPKIKDANIINHYRPICLQNVIL 228


>UniRef50_Q22Y50 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1699

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 205 YLGIVVGFLLASPQYF*SSGRGTFLIITPKYFCVT*YYPMAKNKQKKRNRFF 360
           Y+GI+V F+   P Y  SS R T   + P  F +  +    KNK KK   FF
Sbjct: 652 YVGIIVPFVTCLPLYILSSQRQTTTRM-PCCFLLLWFLLEVKNKSKKLQNFF 702


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,633,572
Number of Sequences: 1657284
Number of extensions: 8545094
Number of successful extensions: 16022
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16022
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)