BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G04f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch... 27 2.2 SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 25 9.0 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 9.0 SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0 >SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Schizosaccharomyces pombe|chr 1|||Manual Length = 166 Score = 26.6 bits (56), Expect = 2.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 296 IFV*LDITPWRRTNKKNVIAS 358 +F+ L IT WRR N+K+ IAS Sbjct: 12 LFLYLLITRWRRKNEKSFIAS 32 >SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 191 TNLLRPRMSNSEGMILRHFCYFTGGKVAKG 102 + LL+PR++N G + RH T G + G Sbjct: 55 SKLLKPRVNNRIGSVDRHIGIATTGFIPDG 84 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 24.6 bits (51), Expect = 9.0 Identities = 7/20 (35%), Positives = 16/20 (80%) Frame = -1 Query: 194 ETNLLRPRMSNSEGMILRHF 135 ++++ RP+ +SEG +L+H+ Sbjct: 558 KSDIYRPKKFSSEGFVLKHY 577 >SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 24.6 bits (51), Expect = 9.0 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -2 Query: 268 PDRCFRSIVETPKEIPQRSRDKSPWRQIF*DHE 170 P+ IV+ P E+ + + ++S W+ I D E Sbjct: 163 PESLVVEIVDLPSEVTKDTAEESVWKDIGLDQE 195 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,984,382 Number of Sequences: 5004 Number of extensions: 40348 Number of successful extensions: 85 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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