Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    27   2.2  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    25   9.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.0  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 296 IFV*LDITPWRRTNKKNVIAS 358
           +F+ L IT WRR N+K+ IAS
Sbjct: 12  LFLYLLITRWRRKNEKSFIAS 32


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 191 TNLLRPRMSNSEGMILRHFCYFTGGKVAKG 102
           + LL+PR++N  G + RH    T G +  G
Sbjct: 55  SKLLKPRVNNRIGSVDRHIGIATTGFIPDG 84


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -1

Query: 194 ETNLLRPRMSNSEGMILRHF 135
           ++++ RP+  +SEG +L+H+
Sbjct: 558 KSDIYRPKKFSSEGFVLKHY 577


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 268 PDRCFRSIVETPKEIPQRSRDKSPWRQIF*DHE 170
           P+     IV+ P E+ + + ++S W+ I  D E
Sbjct: 163 PESLVVEIVDLPSEVTKDTAEESVWKDIGLDQE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,382
Number of Sequences: 5004
Number of extensions: 40348
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)