Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.47 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.62 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 514 WWRFFFLNCILHI 476
           WW +  LNC +HI
Sbjct: 165 WWPYDILNCTIHI 177


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 249 VLWRRQK---KSHNDPEIRVHGDKSFKTTNV 166
           ++WRR     ++ N+PEIRV  D S   T V
Sbjct: 342 LVWRRNGADLETLNEPEIRVFNDGSLYLTKV 372


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 213 DRCGISFGVSTILLKQRSGNFFNYYPKIFLCNLILPHGEEQTKKT 347
           D CG SFG + +L   +     +Y  K++ C L   H    +KKT
Sbjct: 235 DICGKSFGYNHVL---KLHQVAHYGEKVYKCTLC--HETFGSKKT 274


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 360 KEAITFFLFVLRHGVI 313
           KEA+  F+ +L+HG++
Sbjct: 74  KEAVNEFMQLLKHGML 89


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 360 KEAITFFLFVLRHGVI 313
           KEA+  F+ +L+HG++
Sbjct: 74  KEAVNEFMQLLKHGML 89


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 221 TTIPR*ESMETNLLRPRMSNSEGMILRH 138
           +T+P  + M T   RP+   S+G    H
Sbjct: 26  STMPMPDDMRTVTKRPKTKKSQGSRTTH 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,522
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)