BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G01f (476 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 29 0.48 SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 27 1.5 SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 1.5 SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 26 3.4 SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 25 4.5 SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 5.9 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 5.9 SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9 >SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizosaccharomyces pombe|chr 3|||Manual Length = 569 Score = 28.7 bits (61), Expect = 0.48 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPL--TTNITGTKGTVIAAFG 178 +S DEK RKS D+ +P + + QPGL+Q + N+ G V A +G Sbjct: 43 KSSDEKSRKSSEDKRSP----QSTVVQPGLLQVTIIEARNLKLPSGHVPANYG 91 >SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 27.1 bits (57), Expect = 1.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 267 KPNIKQPGLVQQPLTTNI 214 K NIKQPGL + PL T++ Sbjct: 383 KMNIKQPGLSEAPLLTDL 400 >SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosaccharomyces pombe|chr 1|||Manual Length = 526 Score = 27.1 bits (57), Expect = 1.5 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 199 NCHCCFWIFTKKTKDLM*ETSFSCKC*MMIIRWTE 95 N CC + TK KDL+ T FS + I +W + Sbjct: 266 NYLCCSFSLTKAEKDLVRATEFSNSMLISIEKWAK 300 >SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 507 Score = 25.8 bits (54), Expect = 3.4 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -3 Query: 354 IXGVAKKPESDDEKKRKSKWDQAAP 280 I ++K + DEK K +WDQ P Sbjct: 5 ISSISKASMNSDEKLDKKEWDQQLP 29 >SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 25.4 bits (53), Expect = 4.5 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -3 Query: 318 EKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITG--TKGTVIAAFGSLPKKP 160 +K + +W+ IG+ PN+ P + + +G T +AAF LP KP Sbjct: 206 KKNERGQWEVQYRVIGNPPNVAVPTHFFKVIIAEKSGEPTSSPSVAAF-VLPNKP 259 >SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Schizosaccharomyces pombe|chr 1|||Manual Length = 1188 Score = 25.0 bits (52), Expect = 5.9 Identities = 7/15 (46%), Positives = 13/15 (86%) Frame = -3 Query: 318 EKKRKSKWDQAAPNI 274 +K ++S+WDQA P++ Sbjct: 212 QKPKRSRWDQAPPSV 226 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 25.0 bits (52), Expect = 5.9 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -3 Query: 270 SKPNIKQ-PGLVQQPLTTNITGTKGTVIAAFGSLPK 166 S P++ Q PG + Q +T I T+G + AF +LP+ Sbjct: 601 SYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPE 636 >SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 24.6 bits (51), Expect = 7.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 270 SKPNIKQPGLVQQPLTTNITGTKGTVIAAFGSL 172 + P + PG+ P ++ITG G V+A GSL Sbjct: 203 ASPAMVGPGV---PFYSSITGANGNVLAPSGSL 232 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,279,789 Number of Sequences: 5004 Number of extensions: 18462 Number of successful extensions: 56 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 184476110 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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