Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G01f
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    29   0.48 
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   1.5  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   1.5  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   3.4  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   4.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   5.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   5.9  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPL--TTNITGTKGTVIAAFG 178
           +S DEK RKS  D+ +P    +  + QPGL+Q  +    N+    G V A +G
Sbjct: 43  KSSDEKSRKSSEDKRSP----QSTVVQPGLLQVTIIEARNLKLPSGHVPANYG 91


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 267 KPNIKQPGLVQQPLTTNI 214
           K NIKQPGL + PL T++
Sbjct: 383 KMNIKQPGLSEAPLLTDL 400


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 199 NCHCCFWIFTKKTKDLM*ETSFSCKC*MMIIRWTE 95
           N  CC +  TK  KDL+  T FS    + I +W +
Sbjct: 266 NYLCCSFSLTKAEKDLVRATEFSNSMLISIEKWAK 300


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 354 IXGVAKKPESDDEKKRKSKWDQAAP 280
           I  ++K   + DEK  K +WDQ  P
Sbjct: 5   ISSISKASMNSDEKLDKKEWDQQLP 29


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 318 EKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITG--TKGTVIAAFGSLPKKP 160
           +K  + +W+     IG+ PN+  P    + +    +G  T    +AAF  LP KP
Sbjct: 206 KKNERGQWEVQYRVIGNPPNVAVPTHFFKVIIAEKSGEPTSSPSVAAF-VLPNKP 259


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 318 EKKRKSKWDQAAPNI 274
           +K ++S+WDQA P++
Sbjct: 212 QKPKRSRWDQAPPSV 226


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 270 SKPNIKQ-PGLVQQPLTTNITGTKGTVIAAFGSLPK 166
           S P++ Q PG + Q +T  I  T+G  + AF +LP+
Sbjct: 601 SYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPE 636


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 270 SKPNIKQPGLVQQPLTTNITGTKGTVIAAFGSL 172
           + P +  PG+   P  ++ITG  G V+A  GSL
Sbjct: 203 ASPAMVGPGV---PFYSSITGANGNVLAPSGSL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,789
Number of Sequences: 5004
Number of extensions: 18462
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)