Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G01f
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0444 + 17816207-17817436                                         29   1.9  
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674...    28   4.5  
06_03_0334 - 19660526-19661755                                         27   7.8  

>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 339 KKPESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITG-TKGTVIAAFGSLPKK 163
           K+PE     K++ K   A   +G KPN +   L  + +TT      K       G+  KK
Sbjct: 321 KRPEGQKAAKQRQKGKGAPSPLGDKPN-QNMVLFHEAITTKAAALLKAAEATLIGAEAKK 379

Query: 162 PKI*CEKR 139
            K   +KR
Sbjct: 380 EKAIAKKR 387


>11_06_0618 +
           25565780-25566064,25566855-25567046,25567144-25567416,
           25567636-25567738,25568273-25568391,25568615-25568782,
           25568908-25569386,25569742-25569850,25569905-25570070,
           25571405-25571433
          Length = 640

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 339 KKPESDDEKKRKSKWDQAAP 280
           ++PE +DE++ K +W + AP
Sbjct: 35  RRPEEEDEEESKKRWPERAP 54


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 339 KKPESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITG-TKGTVIAAFGSLPKK 163
           K+PE     K++ K   A   +G KP+ +   L  + +TT      K       G+  KK
Sbjct: 321 KRPEGQKAAKQRQKGKGAPSPLGDKPS-QNMVLFHEAITTKAAALLKAAEATLIGAEAKK 379

Query: 162 PKI*CEKR 139
            K   +KR
Sbjct: 380 EKAIAKKR 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,895,805
Number of Sequences: 37544
Number of extensions: 109664
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)